Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,043,229 – 7,043,324 |
Length | 95 |
Max. P | 0.918691 |
Location | 7,043,229 – 7,043,324 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 86.27 |
Mean single sequence MFE | -28.85 |
Consensus MFE | -21.46 |
Energy contribution | -22.15 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.11 |
Mean z-score | -2.28 |
Structure conservation index | 0.74 |
SVM decision value | 1.12 |
SVM RNA-class probability | 0.918691 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7043229 95 + 22407834 UGUUUGUUUGCAUUAGGUGUGUGUGCGCUUUCCAUUGUACA-------UAUGUACAUGCAUAC----AUAUAUAGACAUGUGCGUGGUGGACGGGCAAUUUACCAU--- ((((((((..(.(((.(((((((((((........(((((.-------...))))))))))))----)))).))).(((....))))..)))))))).........--- ( -29.20) >DroSec_CAF1 11924 95 + 1 UGUUUGUUUGCAUUGGGUGUGUGUGCGCUUUCCAUUGUACA-------UAUGUACAUGCAUAC----AUAUAUAGACAUGUGCGUGGUGGACGGGCAAUUUACCAU--- ((((((((..(.....(((((((((((........(((((.-------...))))))))))))----)))).....(((....))))..)))))))).........--- ( -29.00) >DroSim_CAF1 11891 95 + 1 UGUUUGUUUGCAUUGGGUGUGUGUGCGCUUUCCAUUGUACA-------UAUGUACAUGCAUAC----AUAUAUAGACAUGUGCGUGGUGGACGGGCAAUUCACCAU--- ((((((((..(.....(((((((((((........(((((.-------...))))))))))))----)))).....(((....))))..)))))))).........--- ( -29.00) >DroEre_CAF1 12256 107 + 1 UGUUUGUUUGCAUUGGGUGUGUGUU--CUUUCGAUUGUACAUAGUAAAUAUGUACAUGCAUACAUAAAUAUGUACAUAUGUGCGCGGUGGUCAGACAAUUUACCACGUA ...((((((((((((.((((((((.--........((((((((.....)))))))).))))))))......((((....)))).)))))..)))))))........... ( -28.20) >consensus UGUUUGUUUGCAUUGGGUGUGUGUGCGCUUUCCAUUGUACA_______UAUGUACAUGCAUAC____AUAUAUAGACAUGUGCGUGGUGGACGGGCAAUUUACCAU___ ((((((((..(..........((((((........)))))).......((((((((((..((..........))..)))))))))))..))))))))............ (-21.46 = -22.15 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:29 2006