Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,041,214 – 7,041,308 |
Length | 94 |
Max. P | 0.649609 |
Location | 7,041,214 – 7,041,308 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 75.70 |
Mean single sequence MFE | -18.86 |
Consensus MFE | -8.64 |
Energy contribution | -11.40 |
Covariance contribution | 2.76 |
Combinations/Pair | 1.05 |
Mean z-score | -1.84 |
Structure conservation index | 0.46 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.649609 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7041214 94 - 22407834 UGAACACAGCCUGAAUCAAAUCGCACUUUAAAUAAUAUUUCAAGUUUACAAAUGAUCUCAUUCGUUCAAAUGAUUGAGUCAUGGAAAACGCAAC ........((.((((.......................)))).((((....((((.((((.((((....)))).))))))))...))))))... ( -13.50) >DroSec_CAF1 9835 94 - 1 UGAACAGAGCCCGAAUCAAAUCGCACUUAAAAUAAUAUUUAAGGUUUUCCGAUGAUCUCAUUCGUUCAAAUGAUUGAGUCAUGGAAAACGCAAC ......................((.((((((......))))))(((((((.((((.((((.((((....)))).)))))))))))))))))... ( -25.50) >DroSim_CAF1 9859 93 - 1 UGAACAGAGCCCGAAUCAAGUCGCACUUAAAAUAAUAUUUAAGGUUUUCCGAUGAUCUCAUCCGUUCAAAUGAUUGAGUCAUGGA-AACGCAAC .((...((.......))...))((.((((((......))))))..(((((.((((.((((..(((....)))..)))))))))))-)).))... ( -19.10) >DroEre_CAF1 10260 88 - 1 UAAAUAGUGCAUCGAACAAGUCUCAGUUCAAAUAAUAUUUAAGACUUCUCGAUGAUCUCAUUCGUU------AUCUAGUCAUGGAAAACGCACU .....((((((((((..((((((.((............)).)))))).)))))..........(((------.((((....)))).)))))))) ( -19.40) >DroYak_CAF1 10076 79 - 1 --------GCCUCGAACAAGUGUC-GUUUAAAAAAUAGUAAAGGUUUUUCGAUGAUCUCAUUCGCA------AUUGAGUCAUGGAAAACGCACU --------..........((((.(-((((..(((((.......)))))((.((((.((((......------..)))))))).))))))))))) ( -16.80) >consensus UGAACAGAGCCUGAAUCAAGUCGCACUUAAAAUAAUAUUUAAGGUUUUCCGAUGAUCUCAUUCGUUCAAAUGAUUGAGUCAUGGAAAACGCAAC ...........................................(((((((.((((.((((.((((....)))).)))))))))))))))..... ( -8.64 = -11.40 + 2.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:28 2006