Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,031,548 – 7,031,665 |
Length | 117 |
Max. P | 0.930040 |
Location | 7,031,548 – 7,031,665 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.95 |
Mean single sequence MFE | -44.95 |
Consensus MFE | -29.50 |
Energy contribution | -28.45 |
Covariance contribution | -1.05 |
Combinations/Pair | 1.41 |
Mean z-score | -2.13 |
Structure conservation index | 0.66 |
SVM decision value | 1.20 |
SVM RNA-class probability | 0.930040 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7031548 117 - 22407834 GACAUCCGCCAAGGAGGCAGAGAAUGUAGAGCGUCUGUUCUACGAGAUUGCCGCCGAAUUGAUUGGUCAGGCAAGGAGCAAGGAUGGCAGUAGUUCGGCC---GCAGCGGCAGCCGCCCA ..((((((((.....)))......((((((((....))))))))...((((((((((.....)))))..))))).......)))))......(..((((.---((....)).))))..). ( -40.80) >DroVir_CAF1 1464 114 - 1 AACAUCCGCCAAAGAGGCGGAAAACGUUGAGCGUCUGUUCUAUGAAAUCGCCGCCGAACUUAUCGGUCAAGCUCGCAGCAAGGACGGCAACAGUGCUGCU------GCUGCGGCUGCACA ....((((((.....))))))...(((.((((....)))).))).....((.(((((.....)))))..(((.(((((((..(.(((((....)))))))------)))))))))))... ( -43.40) >DroGri_CAF1 306 117 - 1 AACGUCCGCCAAAGAGGCUGAGAACGUGGAACGAUUGUUCUAUGAGAUUGCCGCCGAGCUGAUUGGUCAGGCGCGCAGCAAGGAUGGGAGCAGUGCUGCU---GCAGCGGCGGCUGCACA ..((((((((.....)))......((((((((....)))))))).(.((((((((..(((....)))..)))).)))))..)))))...((((((((((.---...))))).)))))... ( -50.20) >DroWil_CAF1 134 120 - 1 AACAUCCGCCAAAGAGGCCGAAAACGUAGAGCGUUUAUUUUAUGAAAUUGCUGCCGAAUUGAUUGGUCAAGCUAGGAGUAAGGAUGGCAGUGCUGCGGCGGCAGCAGCAGCGGCUGCCCA ..((((((((.....)))...(((((.....)))))...........(((((.((...((((....))))....))))))))))))((((((((((.((....)).))))).)))))... ( -42.10) >DroMoj_CAF1 276 114 - 1 AACAUCCGCCAAAGAGGCGGAAAACGUAGAACGCCUGUUCUAUGAAAUCGCCGCCGAGCUAAUUGGCCAAGCGCGCAGCAAGGACGGCACCAGUGCCGCA------GCUGCAGCUGCACA ....((((((.....))))))...((((((((....)))))))).....((.(((((.....)))))..(((..(((((...(.(((((....)))))).------))))).)))))... ( -49.20) >DroAna_CAF1 125 117 - 1 GACAUCCGCCAAGGAGGCGGAGAAUGUGGAGCGACUGUUUUACGAGAUCGCCGCCGAACUAAUUGGCCAGGCACGAAGUAAGGACGGAAGCAGUGCUGCA---GCAGCGGCGGCAGCUCA ....((((((.....))))))....(((((((....)))))))(((...(((((((.........((..(((((........(.(....)).)))))...---))..)))))))..))). ( -44.00) >consensus AACAUCCGCCAAAGAGGCGGAAAACGUAGAGCGUCUGUUCUAUGAAAUCGCCGCCGAACUGAUUGGUCAAGCACGCAGCAAGGACGGCAGCAGUGCUGCA___GCAGCGGCGGCUGCACA .....(((((.....(((((....((((((((....))))))))...)))))(((((.....)))))...((.....))..)).)))..(((((((.((.......)).))).))))... (-29.50 = -28.45 + -1.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:24 2006