Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,029,149 – 7,029,253 |
Length | 104 |
Max. P | 0.816442 |
Location | 7,029,149 – 7,029,253 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 79.58 |
Mean single sequence MFE | -20.87 |
Consensus MFE | -15.75 |
Energy contribution | -15.83 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.22 |
Mean z-score | -1.70 |
Structure conservation index | 0.75 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.816442 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7029149 104 + 22407834 UAAAAUAUACUUUACUUUACAUGCAAAAGUAUCUUUACGUUUAAGCUUAGUUUCGAUUCAUUCCAAUUGGAU------GUGCAAUCGAAAGCUUUUAAGCGGAACGAACA ..(((.(((((((............))))))).))).(((((..((((((((((((((((((((....))).------))).))))))))....)))))).))))).... ( -24.30) >DroSec_CAF1 15160 98 + 1 UUAAAUACAUUUUACUUUACAUGUUAAAGUAUCUUUACAUUUAAGCUUAGUUUCGAUUCAUUCCAAUUGGAU------GUGAAAUCGAAAGCUUCU--GCAG----AACA ((((((......(((((((.....))))))).......))))))((..((((((((((((((((....))).------))).))))).)))))...--))..----.... ( -20.72) >DroSim_CAF1 15296 100 + 1 UUAAAUACAUUUUACUUUACAUGUUAAAGUAUCUUUACAUUUAUGCUCAGUUUCGAUUCAUUCCAAUUGGAU------GUGCAAUCGAAAGCUUCUAAGCAG----AACA .(((((......(((((((.....))))))).......)))))((((.((((((((((((((((....))).------))).))))))))....)).)))).----.... ( -20.12) >DroEre_CAF1 15462 106 + 1 GUAAAUAAUUUUUACUUUACAUGGUAAAGUAUCUUUAAGUUUUAGUUUGGUUUCGAUUCAUUUCAAUUGGAAGACGAAACACAAUCGAUAGUUUCCAAGCAG----AAUC ............((((((((...)))))))).......(((((.((((((..((((((..((((...........))))...))))))......))))))))----))). ( -18.30) >DroYak_CAF1 15651 106 + 1 AUAGAUAAAUAUUACUUUACAUGGUAGAGUAUCUUUACGUUUCAGUUUGGUUUCGAUUCAUUUCAAUUGGAAGGCGAUAUGCAAUCGAUAGUUUCCAAGCAG----AACC .....((((...((((((((...))))))))..)))).((((..((((((..(((((((((.((...........)).))).))))))......)))))).)----))). ( -20.90) >consensus UUAAAUAAAUUUUACUUUACAUGGUAAAGUAUCUUUACGUUUAAGCUUAGUUUCGAUUCAUUCCAAUUGGAU______GUGCAAUCGAAAGCUUCUAAGCAG____AACA ............(((((((.....))))))).............((((((((((((((((((((....))).......))).))))))))....)))))).......... (-15.75 = -15.83 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:23 2006