Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,026,593 – 7,026,685 |
Length | 92 |
Max. P | 0.540989 |
Location | 7,026,593 – 7,026,685 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 76.02 |
Mean single sequence MFE | -22.02 |
Consensus MFE | -15.96 |
Energy contribution | -15.60 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.48 |
Mean z-score | -0.85 |
Structure conservation index | 0.72 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.540989 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7026593 92 + 22407834 UGGGUCGCUCGUCUGCAGCUUUGUUUGCAGAGUCAUAGAGAGCUGGGCAAGAAAAAAUAAAAAAAAAGGGGGGGGGGUGUUCCAUUGGUUAU (((..(((((.(((((((......)))))))(((.(((....))))))..........................)))))..)))........ ( -21.60) >DroPse_CAF1 14499 78 + 1 UCCCUCGCUUGUUUGCAGCUUGGUUUGCAGAGUCAUAGAGAGCUGGGCAGGUCAGAA--CAA----------GUGGGUGCGAAAUAGA--AU ((((((((((((((((.(((..(((..(.........)..)))..)))..))..)))--)))----------))))).).))......--.. ( -23.30) >DroSec_CAF1 12624 82 + 1 UGGGUCGCUCGCCUGCAGCUUUGUUUGCAGAGUCAUAGAGAGCUGGAUAAGAAAAAAAAUAA----------GGGAGUGUUCCAUCGGUUAU (((..(((((.(((.(((((((.(.((......)).).)))))))................)----------)))))))..)))........ ( -21.33) >DroSim_CAF1 12765 82 + 1 UGGGUCGCUCGCCUGCAGCUUUGUUUGCAGAGUCAUAGAGAGCUGGGCAAGAAAAAAUAUAA----------GGGGGUGUUCCAUCGGUUAU (((..(((((.(((.........(((((..(((........)))..)))))..........)----------)))))))..)))........ ( -21.31) >DroEre_CAF1 12877 73 + 1 UGGGUCGCUCGCCUGCAGCUUUGUUUGCAGAGUCAUAGAGAGCUGGGGAAG---------AG----------AGUGGUGUCUCAUCGGUUAU ((((((((((.(((.(((((((.(.((......)).).))))))))))...---------.)----------)))))...))))........ ( -21.70) >DroYak_CAF1 13080 76 + 1 UGGAUCGCUCGCCUGCAGCUUUGUUUGCAGAGUCAGGGAGAGCUAGGGAAA------AAUAG----------AGGGGUGUUCCAUCGGUUAU ..((((((((.((((..((((((....))))))))))..))))..((((..------.((..----------....)).))))...)))).. ( -22.90) >consensus UGGGUCGCUCGCCUGCAGCUUUGUUUGCAGAGUCAUAGAGAGCUGGGCAAGAAAAAA_AUAA__________GGGGGUGUUCCAUCGGUUAU ((((.(((((..((((((......)))))).(((.(((....))))))..........................))))).))))........ (-15.96 = -15.60 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:19 2006