Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,019,303 – 7,019,404 |
Length | 101 |
Max. P | 0.959080 |
Location | 7,019,303 – 7,019,404 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 78.59 |
Mean single sequence MFE | -31.43 |
Consensus MFE | -15.56 |
Energy contribution | -19.78 |
Covariance contribution | 4.22 |
Combinations/Pair | 1.19 |
Mean z-score | -2.82 |
Structure conservation index | 0.50 |
SVM decision value | 1.50 |
SVM RNA-class probability | 0.959080 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7019303 101 + 22407834 CCAAACCCAAAGCCAAGGGAUCUUCGGGUCCCACAACCACUAGGGCUAUCUGGUUCUCCUUGCUCCAUUUAGCAAUGGCCUUUAAAA-GA----GGCGAU-----UAAAAU ................((((((....))))))....((....))((((..(((..(.....)..)))..))))(((.(((((.....-))----))).))-----)..... ( -31.20) >DroVir_CAF1 91468 106 + 1 CCAGCCCCAAAGCCAGCGGAUCUUCGGGUCCAACCACCACCAGCGAGAUUCGUUUCUGCGUGCACCACUUGGCAAUGGCCUGGAAAA-GA----UUCCAAAUCAACACAAU ((((..(((..(((((.(((((....)))))...(((((..((((.....))))..)).)))......)))))..))).))))....-((----(.....)))........ ( -30.40) >DroPse_CAF1 6291 106 + 1 CCAGACCCAAGGCCAAGGGAUCUUCGGGUCCAACGACCACUAGAGAGAUUUCAUUUUUCUUGCUCCAUUUGGCAAUGGCCUGAAGAAAGAACAGAGCAAA-----AAAUAU .(((..(((..(((((((((((....)))))...((.((..((((((((...)))))))))).))..))))))..))).)))..................-----...... ( -27.50) >DroSec_CAF1 5543 100 + 1 CCAAGCCCAAAGCCAAGGGAUCUUCGGGUCCCACAACCACCAGGGCUAUCUGGUUCUCCUUGCUCCAUUUAGCAAUGGCCUUUAAAA-GA----GGCGAU-----A-AAAU ...........(((..((((((....)))))).......(((..((((..(((..(.....)..)))..))))..))).........-..----)))...-----.-.... ( -32.30) >DroSim_CAF1 5608 101 + 1 CCAAGCCCAAAGCCAGGGGAUCUUCGGGUCCCACAACCACCAGGGCUAUCUGGUUCUCCUUGCUCCAUUUAGCAAUAGCCUUUAAAA-GA----GGCGAA-----AAAAAU ((((((((........((((((....))))))..........)))))...)))(((...(((((......)))))..(((((.....-))----))))))-----...... ( -32.97) >DroEre_CAF1 5639 98 + 1 CCAGACCCAAAGCCAAGGGAUCUUCGGGUCCCACGAUCACCAGGGAUAUCUGGUUUUCCUUACUCCAUUUGGCAAUGGCCUUUAAAG-AG----GG-AAA------AUAA- ......(((..(((((((((((....))))))..((..((((((....))))))..))..........)))))..)))((((....)-))----).-...------....- ( -34.20) >consensus CCAAACCCAAAGCCAAGGGAUCUUCGGGUCCCACAACCACCAGGGAUAUCUGGUUCUCCUUGCUCCAUUUAGCAAUGGCCUUUAAAA_GA____GGCGAA_____AAAAAU ...........((((.((((((....))))))......((((((....)))))).....(((((......)))))))))................................ (-15.56 = -19.78 + 4.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:18 2006