| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 732,045 – 732,165 |
| Length | 120 |
| Max. P | 0.839722 |
| Location | 732,045 – 732,165 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 96.50 |
| Mean single sequence MFE | -30.72 |
| Consensus MFE | -28.86 |
| Energy contribution | -28.30 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.94 |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.839722 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 732045 120 - 22407834 GUACCAUUGUUCUUCACCACCCAAAGAACGCGAAAAUGUUUGCCAAUGUAAUUAAAAAUACAUUUGUGGUAAAGAGCAGUGAGAAGUGAGCGUAGGCCGAUCGACCAGAAGGAAGUCGAU ....((((((((((.(((((.........(((((....))))).((((((........)))))).))))).)))))))))).....((.((....))))((((((.........)))))) ( -31.20) >DroSec_CAF1 3564 120 - 1 UUACCAUUGUUCUUCACCACCCAAAGAACGCGAAAAUGUUUGCCAAUGUAAUUAAAAAUACAUUUGCGGUAAAGAGCAGUGAGAAGCGAGCGUAGGCCGAUCGACCAGAAGGAAGUCGAG ....((((((((((.(((.......(((((......)))))((.((((((........)))))).))))).)))))))))).....((.((....)))).(((((.........))))). ( -31.80) >DroSim_CAF1 3570 120 - 1 UUACCAUUGUUCUUCACCACCCAAAGAACGCGAAAAUGUUUGCCAAUGUAAUUAAAAAUACAUUUGCGGUAAAGAGCAGUGAGAAGCGAGCGUAGGCCGAUCGACCAGAAGGAAGUCGAU ....((((((((((.(((.......(((((......)))))((.((((((........)))))).))))).)))))))))).....((.((....))))((((((.........)))))) ( -32.20) >DroEre_CAF1 3597 120 - 1 GUACCAUUGUUGUUCGCCACCCAAAGAACGCGAAAAUGUUUGCCAAUGUAAUUAAAAAUACAUUUGUGGUAAGGAGCAGUGAGAAGCGAGCGUAGGCCGAUCGACCAGAAGGAAGUUGAU ....(((((((.((..((((.........(((((....))))).((((((........)))))).))))..)).))))))).....((.((....))))((((((.........)))))) ( -27.50) >DroYak_CAF1 3802 120 - 1 GUGCCAUUGUUCUUCACCACCCAAAGAACGCGAAAAUGUUUGCCAAUGUAAUUAAAAAUACAUUUGUGGUAAAGAGCAGUGAGAAGCGAGCGUAGGCCGAUCGACCAGAAGGAAGUUGAU ....((((((((((.(((((.........(((((....))))).((((((........)))))).))))).)))))))))).....((.((....))))((((((.........)))))) ( -30.90) >consensus GUACCAUUGUUCUUCACCACCCAAAGAACGCGAAAAUGUUUGCCAAUGUAAUUAAAAAUACAUUUGUGGUAAAGAGCAGUGAGAAGCGAGCGUAGGCCGAUCGACCAGAAGGAAGUCGAU ....((((((((((.(((.......(((((......)))))((.((((((........)))))).))))).)))))))))).....((.((....))))((((((.........)))))) (-28.86 = -28.30 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:17 2006