Locus 2538

Sequence ID 2L_DroMel_CAF1
Location 7,011,807 – 7,011,899
Length 92
Max. P 0.757539
window4058

overview

Window 8

Location 7,011,807 – 7,011,899
Length 92
Sequences 4
Columns 93
Reading direction forward
Mean pairwise identity 89.73
Mean single sequence MFE -18.85
Consensus MFE -14.80
Energy contribution -14.05
Covariance contribution -0.75
Combinations/Pair 1.25
Mean z-score -1.80
Structure conservation index 0.79
SVM decision value 0.49
SVM RNA-class probability 0.757539
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7011807 92 + 22407834
GUGCAAUUAA-AAUGUGUCUUGACUUCUUAGGAAGUAGAAAAGGAAAUUUAGUUUUCCUAAUGCUAAAGCAUUAGUUAAGGGAAUAUGAAUAA
.....(((..-.((((.(((((((((((........))))..(((((......)))))((((((....)))))))))))))..)))).))).. ( -18.10)
>DroSec_CAF1 32734 92 + 1
GUGCAAUUAA-AAUGUGUUCUGACUUCUUGGGAAGUAGAAAAGGAAAUUUAGUGUUCCUAAUGCUAAAGCAUUAGUUAAGGGAAUAUGAAUAA
..........-......(((((.((((....)))))))))......(((((.(((((((...(((((....)))))...)))))))))))).. ( -19.20)
>DroSim_CAF1 32534 92 + 1
GUGCAAUUAA-AAUGUGUUUUGACUUCUUGGGAAGUAGAAAAGGAAAUUUAGUUUUCCUAAUGCUAAAGCAUUAGUUAAGGGAAUAUGAAUAA
...(..((((-...(((((((((((((....))))).....((((((......)))))).....))))))))...))))..)........... ( -18.40)
>DroEre_CAF1 32707 91 + 1
GUGCGAUUAAAAAU--GUGUUGGCUUCUUAGGAAGUAGAAAAGGGAAUGUAUAUUUCCUAAUGGUAAAGCAUUACCCAAGGGAAUAUGAAUAC
..............--(((((.(((((....))))).............((((((((((...(((((....)))))..))))))))))))))) ( -19.70)
>consensus
GUGCAAUUAA_AAUGUGUUUUGACUUCUUAGGAAGUAGAAAAGGAAAUUUAGUUUUCCUAAUGCUAAAGCAUUAGUUAAGGGAAUAUGAAUAA
.................((((.(((((....))))).....)))).(((((...(((((...(((((....)))))...)))))..))))).. (-14.80 = -14.05 +  -0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:15 2006