Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,011,610 – 7,011,730 |
Length | 120 |
Max. P | 0.714125 |
Location | 7,011,610 – 7,011,730 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.67 |
Mean single sequence MFE | -23.53 |
Consensus MFE | -18.38 |
Energy contribution | -21.22 |
Covariance contribution | 2.84 |
Combinations/Pair | 1.03 |
Mean z-score | -1.66 |
Structure conservation index | 0.78 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.714125 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7011610 120 - 22407834 CGCGUGUACCCUAUAAUUAAAUUGUUUUAUUCCAGUGGAUGUGUAAAUUGGAUCGAUUUAUCUGCUUUAUAUUUCUACUGGAAGCAGUGCAUUAUUUAUCAUCAUUUUCGUUUUAUCUGU ...((((((........((((....))))((((((((((.(((((((..((((......))))..))))))).))))))))))...))))))............................ ( -27.00) >DroSec_CAF1 32539 120 - 1 CGCGUGUACCCUAUAAUUAAAUUGUUUUAUUCCAGUGGAUGUGUAAAUUGCAUCGAUUUAUCUGCUUUAUAUUUCUACUGGAAGCAGCGCAUUAUUUUUCAUCAUGCUCUUUUUAUCUGU .(((((......(((((....((((....((((((((((.(((((((..(((..........)))))))))).))))))))))))))...))))).......)))))............. ( -27.82) >DroSim_CAF1 32339 120 - 1 CGCGUGUACCCUAUAAUUAAAUUGUUUUAUUCCAGUGGAUGUGUAAAUUGCAUCGAUUUAUCUGCUUUAUAUUUCUACUGGAAGCAGCGCAUUAUUUUUCAUCAUGCUCUUUUUAUCUGU .(((((......(((((....((((....((((((((((.(((((((..(((..........)))))))))).))))))))))))))...))))).......)))))............. ( -27.82) >DroEre_CAF1 32512 120 - 1 UGCUUGUACCCUAUAAUUAAAUUGUUUUAUUCCGGUGGAUGUGUAAAUUACAUCGAUUUAUCUGCCUUAUAUUUCUACAAGAAGCAGUGAAUUAUUUUUUAUCAUGCUCUUUUUAUCUGU ..((((((...(((((.((((....))))....((..((((((((...)))))......)))..)))))))....)))))).(((((((((......)))))..))))............ ( -17.00) >DroYak_CAF1 32489 120 - 1 CGCUUGUACCCUAUAAUUAAAUUGUUGUAUUCCGGUGGAUGUGUAAAUUGCAUCGAUUUAUUUGCUUUAUUUUCCUACAAGAAGCUGUGAAUUAUUUAUUAUCAUGCUCUUUUCAUCUGU .((.((((((.((((((......))))))....))))((((((.....))))))(((((((..(((((............))))).))))))).........)).))............. ( -18.00) >consensus CGCGUGUACCCUAUAAUUAAAUUGUUUUAUUCCAGUGGAUGUGUAAAUUGCAUCGAUUUAUCUGCUUUAUAUUUCUACUGGAAGCAGUGCAUUAUUUUUCAUCAUGCUCUUUUUAUCUGU .(((((......(((((...(((((....((((((((((.(((((((..(((..........)))))))))).)))))))))))))))..))))).......)))))............. (-18.38 = -21.22 + 2.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:14 2006