| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,009,211 – 7,009,302 |
| Length | 91 |
| Max. P | 0.560842 |
| Location | 7,009,211 – 7,009,302 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 83.37 |
| Mean single sequence MFE | -29.55 |
| Consensus MFE | -19.77 |
| Energy contribution | -20.72 |
| Covariance contribution | 0.95 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.560842 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7009211 91 + 22407834 GCAGCUGGCAUGUGAAGUGAGUACCCGAGUGUGUUACUCCCGAUGGAUGGA----CUAC--------------------UUACUCACACAAGUAGUCUAAUGUCAGUUGGCAAAG .((((((((((.....(.(((((.((....).).))))).)......((((----((((--------------------((........))))))))))))))))))))...... ( -28.90) >DroSec_CAF1 30182 91 + 1 GCAGCUGGCAUGUGAAGUGAGUACACGAGUGUGUUACUCCCGAUGGAUGGA----CUAC--------------------UUACUCACACAAGUAGUCUAAUGUCAGUUGGCAAAG .((((((((((.....(.((((((((....))).))))).)......((((----((((--------------------((........))))))))))))))))))))...... ( -33.20) >DroSim_CAF1 29948 83 + 1 GCAGCUGGCAUGUGAAGUGA--------GUGUGUUACUCCCGAUGGAUGGA----CUAC--------------------UUACUCACACAAGUAGUCUAAUGUCAGUUGGCAAAG .((((((((((((((.((((--------(((.(((..(((....)))..))----))))--------------------))))))))...((....)).))))))))))...... ( -29.30) >DroEre_CAF1 30195 91 + 1 GCAGCUGGCAUGUGAAGUGAGUAUCAGAGUGUGUUACUCCCGAUGGAUGGA----CUAG--------------------UUACUCACACAAGUAGUCUAAUGUCAGUUGGCAAAG .((((((((((.....(.(((((.((.....)).))))).)......((((----(((.--------------------((........)).)))))))))))))))))...... ( -26.80) >DroYak_CAF1 30081 91 + 1 GCAGCUGGCAUGUGAAGUGAGUACCAGAGUGUGUUACUCCCGAUGGAUGGA----CUAG--------------------UUACUCACACAAGUGGUCUAAUGUCAGUUGGCAAAG .((((((((((.....(.(((((.((.....)).))))).)......((((----(((.--------------------((........)).)))))))))))))))))...... ( -26.40) >DroAna_CAF1 28111 114 + 1 GCAGCUGGCAUGUGAAGCGAGUACCAGAGUGUGUUACUCCCUAUGGAUGGAUGUACUACAUAUGCUUUGAUCUAUGGUGUUCUUCAUAGCAGCAGACUAAUGUCAGCU-ACAAAG ((.((((.(.(((((((.(((((.((.....)).))))).((((((((.((.(((.......))).)).))))))))....)))))))))))).(((....))).)).-...... ( -32.70) >consensus GCAGCUGGCAUGUGAAGUGAGUACCAGAGUGUGUUACUCCCGAUGGAUGGA____CUAC____________________UUACUCACACAAGUAGUCUAAUGUCAGUUGGCAAAG .((((((((((.....(((((((...(((((...)))))((.......))..............................)))))))...((....)).))))))))))...... (-19.77 = -20.72 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:09 2006