Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,001,690 – 7,001,783 |
Length | 93 |
Max. P | 0.640887 |
Location | 7,001,690 – 7,001,783 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.29 |
Mean single sequence MFE | -33.13 |
Consensus MFE | -20.16 |
Energy contribution | -19.50 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.30 |
Mean z-score | -1.54 |
Structure conservation index | 0.61 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.640887 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7001690 93 - 22407834 AACAAGUUAGCUGUUUGACG---------------GCUGCAAGUUGCUUUCUGGGCCAAACCGCAUAGUCGACUAAUUGCACAAAAAAUGCGGCUUG----UGGCC--------UGCGGC .........(((((.....(---------------((..((((((((.....((......))((((((....)))..))).........))))))))----..)))--------.))))) ( -31.60) >DroPse_CAF1 27746 111 - 1 -ACAAGUUUGUUGUUUGACAGCGGCUGUGGCGGCUGCUGCAAGUUGCUUUCUGGGCCAAACCGCAUAGCCAGCUAAUUGCACAGAAAAUGCGGCUGGCUCAAAGCC--------UGCGGC -........((((((((.(((((((((...))))))))))))...((((..(((((((..((((((..(..((.....))...)...)))))).))))))))))).--------.))))) ( -40.20) >DroEre_CAF1 22658 93 - 1 AACAAGUUAGCUGUUUGACG---------------GCUGCAAGUUGCUUUCUGGGCCAAACCGCAUAGUCAACUAAUUGCACAAAAAAUGCGGCUUA----UGGCC--------UGCGGC .....((.(((((.....))---------------)))))..(((((.....((((((((((((((.(((((....))).)).....)))))).)).----)))))--------)))))) ( -26.90) >DroYak_CAF1 22470 93 - 1 AACAAGUUAGCUGUUUGACG---------------GCUGCAAGUUGCUUUCUGGGCCAAACCGCAUAGUCAACUAAUUGCACAAAAAAUGCGGCUUA----UGGCC--------UGCGGU .........(((((.....(---------------(((..(((((((.....((......))((((((....)))..))).........))))))).----.))))--------.))))) ( -24.70) >DroAna_CAF1 20984 100 - 1 -ACAAGUUUGUGGUUUGGUG---------------GCUGCAAGUUGCUUUCUGGGCCAAACCACAUAGCCAACUAAUUGCACAAAAAAUGUGGCAUG----CCGCAGCCGCAGAAGCAGU -.....((((((((...(((---------------(((((.(((((((...(((......)))...)).))))).....((((.....))))))).)----)))).))))))))...... ( -35.20) >DroPer_CAF1 34471 111 - 1 -ACAAGUUUGUUGUUUGACAGCGGCUGUGGCGGCUGCUGCAAGUUGCUUUCUGGGCCAAACCGCAUAGCCAGCUAAUUGCACAGAAAAUGCGGCUGGCUCAAAGCC--------UGCGGC -........((((((((.(((((((((...))))))))))))...((((..(((((((..((((((..(..((.....))...)...)))))).))))))))))).--------.))))) ( -40.20) >consensus _ACAAGUUAGCUGUUUGACG_______________GCUGCAAGUUGCUUUCUGGGCCAAACCGCAUAGCCAACUAAUUGCACAAAAAAUGCGGCUUG____UGGCC________UGCGGC ...................................(((((((((((((...(((......)))...)).)))))....(((.......)))((((.......))))........)))))) (-20.16 = -19.50 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:02 2006