Locus 2527

Sequence ID 2L_DroMel_CAF1
Location 6,999,761 – 6,999,878
Length 117
Max. P 0.763610
window4043

overview

Window 3

Location 6,999,761 – 6,999,878
Length 117
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 79.54
Mean single sequence MFE -38.55
Consensus MFE -23.89
Energy contribution -24.67
Covariance contribution 0.78
Combinations/Pair 1.13
Mean z-score -1.80
Structure conservation index 0.62
SVM decision value 0.51
SVM RNA-class probability 0.763610
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6999761 117 + 22407834
UCGUCGGCUCCAAUUAAGUGUAGCAAAUUUAGGAGCAGCAACGACGACAGCAAAGCGGCCAGCCAAUGCGAAUUGGCUGCCGUCGAUUGUUUCAUUUUGGCCCGAUUUAAUGCCCAG
(((((((((((...(((((.......)))))))))).....))))))..(((..(((((.(((((((....)))))))))))).(((((..((.....))..)))))...))).... ( -38.10)
>DroPse_CAF1 23909 117 + 1
UCGUCGGCGGUGAUUGUGUGCAGCAAUUGGCACAGCAGCAACGACGACAGCAAAGCGGCCAGCCAAUGCGAAUUGGCUGCCGUCGAAUGGUUCAUGUUGGCCCGAUUAAAUGACCAA
((((((..(.((....(((((........))))).)).)..)))))).......(((((.(((((((....))))))))))))....((((.(((..............))))))). ( -40.54)
>DroEre_CAF1 20671 117 + 1
UCGUCGGCUCCAAUAAGGUGUAGCACAUUUAGGAGCAGCAACGACGACAGCAAAGCGGCCAGCCAAUGCGAAUUGGCUGCCGUCGAUUGUUUCAUUUUGGCCCGAUUUAAUGCCCAG
(((((((((((....(((((.....))))).))))).....))))))..(((..(((((.(((((((....)))))))))))).(((((..((.....))..)))))...))).... ( -39.00)
>DroWil_CAF1 20037 93 + 1
UCGUCGGCUGUAAUUGUUUGGAUCAGACAAAAUAACAGCAAAGACACCAGCAAAGCGGCCAGCCAAUGCGAAUUGGCUGCCGUCGAUUUGUUC------------------------
..(((.(((((..(((((((...)))))))....)))))...)))...(((((((((((.(((((((....))))))))))))...)))))).------------------------ ( -36.30)
>DroAna_CAF1 18578 117 + 1
UCGUCGGCUCCGAUUGAGUGCAGCAAAUUGAAAAACAGUAACGACGACAGCAAAGCGGCCAGCCAAUGCGAAUUGGCUGCCGUCGGUUGGUUCAUGUUGGCCCGAUUUAAUUCACAA
..(((((..((((((((((.((((..((((.....)))).....((((.((...))(((.(((((((....))))))))))))))))))))))).))))).)))))........... ( -36.80)
>DroPer_CAF1 30555 117 + 1
UCGUCGGCGGUGAUUGUGUGCAGCAAUUGGCACAGCAGCAACGACGACAGCAAAGCGGCCAGCCAAUGCGAAUUGGCUGCCGUCGAAUGGUUCAUGUUGGCCCGAUUAAAUGACCAA
((((((..(.((....(((((........))))).)).)..)))))).......(((((.(((((((....))))))))))))....((((.(((..............))))))). ( -40.54)
>consensus
UCGUCGGCUCCAAUUGUGUGCAGCAAAUUGAACAGCAGCAACGACGACAGCAAAGCGGCCAGCCAAUGCGAAUUGGCUGCCGUCGAUUGGUUCAUGUUGGCCCGAUUUAAUGCCCAA
(((((((((((....................))))).....)))))).......(((((.(((((((....)))))))))))).................................. (-23.89 = -24.67 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:01 2006