Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,976,339 – 6,976,439 |
Length | 100 |
Max. P | 0.754205 |
Location | 6,976,339 – 6,976,439 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 79.82 |
Mean single sequence MFE | -26.75 |
Consensus MFE | -15.45 |
Energy contribution | -16.53 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.13 |
Mean z-score | -2.01 |
Structure conservation index | 0.58 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.754205 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6976339 100 - 22407834 AUCACCUACAUUGCAUCCGAUGCAGCUGGAAAUACUGCAUCGUGCAGCUUCAAGGUUUCUCUGCUGAGUAAGUAUUCCACAAGGAAAAU-----UUCGAAGCUCC ...........((((..((((((((.........))))))))))))(((((.((((((..((...((((....))))....))..))))-----)).)))))... ( -28.70) >DroPse_CAF1 2806 94 - 1 AUCACCUACAUUGCCUCCGAUGCGGCUGGCAAUACGGCUUCCUGCAGCUUUAAGGUUUCGCUGUUGAGUAAGUA--UCCACCACAAAAUAUCC---------UGC ...((.(((((((((.(((...)))..))))))(((((..(((.........)))....)))))...))).)).--.................---------... ( -19.20) >DroSec_CAF1 4236 97 - 1 AUCACCUACAUUGCAUCCGAUGCAGCUGGAAACACUGCAUCCUGCAGCUUCAAGGUUUCUCUGCUAAGUAAGUA--CCACAAGGAAAAU-----U-AGAAGCUCC ...........((((...(((((((.((....))))))))).))))(((((((..(((((.((((.....))))--.....)))))..)-----)-.)))))... ( -28.20) >DroSim_CAF1 3899 97 - 1 AUCACCUACAUUGCAUCCGAUGCAGCUGGAAACACUGCAUCCUGCAGCUUCAAGGUUUCUCUGCUAAGUAAGUA--CCACAAGGGAAAU-----U-AGGAGCUCC ...........((((...(((((((.((....))))))))).))))(((((..(((((((((.....((....)--)....))))))))-----)-.)))))... ( -31.10) >DroEre_CAF1 4211 94 - 1 AUCACCUACAUUGCAUCCGACGCAGCUGGAAACACUGCAUCCUGCAGCUUCAAGGUCUCCCUGCUAAGUAAGUA--CCAAAAGGAAACUGGGCUG---------C ..................((.((((.((....)))))).))..(((((((...(((((..((....))..)).)--))...((....))))))))---------) ( -27.10) >DroYak_CAF1 4109 102 - 1 AUCACCUACAUUGCAUCCGAUGCAGCCGGAAACACGGCAUCCUGCAGCUUUAAGGUUUCUCUGCUGAGUAAGUA--CCAAAAGGAAUCUGGAAUG-AUGCAUUUC ...........((((((.......((((......)))).(((.....((((..(((..(((....))).....)--))..)))).....)))..)-))))).... ( -26.20) >consensus AUCACCUACAUUGCAUCCGAUGCAGCUGGAAACACUGCAUCCUGCAGCUUCAAGGUUUCUCUGCUAAGUAAGUA__CCAAAAGGAAAAU_____U_AG_AGCUCC ....(((....((((...(((((((.((....))))))))).))))((((..(((....)))...))))............)))..................... (-15.45 = -16.53 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:57 2006