Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,975,466 – 6,975,576 |
Length | 110 |
Max. P | 0.979485 |
Location | 6,975,466 – 6,975,576 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 73.82 |
Mean single sequence MFE | -28.32 |
Consensus MFE | -22.55 |
Energy contribution | -22.42 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.19 |
Mean z-score | -1.66 |
Structure conservation index | 0.80 |
SVM decision value | 1.84 |
SVM RNA-class probability | 0.979485 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6975466 110 - 22407834 CCAGGGACGCCAACAAACUGGCGGCGAUACAUACACCCUGGAGAUAGCCUUCCCGGCUGCGAAGUAUGUCUAGCACACCUAUGUUGGUUAACCCCACGCAUAAC--CACAUC ...(((..(((((((....((.(((...((((((.(....).(.(((((.....))))))...))))))...)).).))..)))))))....))).........--...... ( -31.20) >DroVir_CAF1 1885 94 - 1 CCAGGGACGCCAACAAACUGGCGGUGACACAUACACGCUGGAAAUAGCCUUCCCGGCUGUUAAGUAUGUCAAGCAUC---UCAUUCGUUCAA------UAU---------AA ....((((((((......))))((((..((((((.(....).(((((((.....)))))))..))))))....))))---......))))..------...---------.. ( -26.10) >DroGri_CAF1 2155 94 - 1 CCAGGGACGCCAACAAACUGGCGGCGAUACAUACACUCUGGAAAUAGCCUUCCCGGCUGUUAAGUAUGUCAAGCAUC---UCAUGCGUUCAU------UAU---------AG ...(((((((((......)))))((...((((((.(....).(((((((.....)))))))..))))))...)).))---))..........------...---------.. ( -27.60) >DroWil_CAF1 1772 108 - 1 UCAGGGACGCCAACAAACUGGCGGUGAUACAUACACUCUGGAAAUAGCCUUCCCGGCUGUUAAGUAUGUCAAACAAAACCAGCACUUCUUACAAUUCGUUCAAU--CU--AA ...((..(((((......)))))((...((((((.(....).(((((((.....)))))))..))))))...))....))........................--..--.. ( -24.50) >DroMoj_CAF1 2060 90 - 1 CCAGGGACGCCAACAAGCUGGCGGCGACACAUACACGCUGGAAAUAGCCUUCCCGGCUGUUAAGUAUGUCAAGCAUCC--ACAUUCGUU-----------U---------AA ....((((((((......)))))((...((((((.(....).(((((((.....)))))))..))))))...)).)))--.........-----------.---------.. ( -26.90) >DroAna_CAF1 1793 112 - 1 CCAGGGACGCCAACAAACUGGCGGCGAUACGUAUACCCUGGAGAUAGCCUUCCCGGCUGUAAAGUAUGUCUAGCACUUGUUCGUUCGUUCAGCCUACGAGUAACACAAAAUC ((((((.(((((......)))))(((...)))...))))))..((((((.....))))))..............((((((..(((.....)))..))))))........... ( -33.60) >consensus CCAGGGACGCCAACAAACUGGCGGCGAUACAUACACCCUGGAAAUAGCCUUCCCGGCUGUUAAGUAUGUCAAGCAUC___ACAUUCGUUCAC______UAU_________AA .......(((((......)))))((...((((((.(....).(((((((.....)))))))..))))))...))...................................... (-22.55 = -22.42 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:56 2006