Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,969,551 – 6,969,646 |
Length | 95 |
Max. P | 0.752995 |
Location | 6,969,551 – 6,969,646 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.19 |
Mean single sequence MFE | -18.72 |
Consensus MFE | -12.42 |
Energy contribution | -12.92 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.05 |
Mean z-score | -1.88 |
Structure conservation index | 0.66 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.752995 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6969551 95 - 22407834 CACUAACUCGUGCC-UUUUAUUUUCUCUG-U-UUUUUUGCAGUUUUCAAUCAAUUGAAAAUCUGACU-CUGACU---------------------AGUGUGAAAGCAAAAGCAUAAGUAU .....(((..(((.-((((.(((((.(((-(-(......((((((((((....))))))).)))...-..))).---------------------))...))))).)))))))..))).. ( -20.50) >DroPse_CAF1 9401 88 - 1 CACUAACCCGUGCC-UUUUAUUUUCUCUUAUCUU-UUUGCAGUUUUCAAU--AUUGAAAAUCUGA-------AC---------------------AAUGUGAAAACAAAAGCAUAAGUAU .....((..((((.-((((.(((((.(.......-....(((((((((..--..)))))).))).-------..---------------------...).))))).))))))))..)).. ( -13.13) >DroEre_CAF1 10007 94 - 1 CACUAACUCGUGCC-UUUUAUUUUCUCUG-U-UU-UUUGCAGUUUUCAAUCAAUUGAAAAUCUGACU-CUGACU---------------------AGUGUGAAAGCAAAAGCAUAAGUAU .....(((..(((.-((((.(((((.(((-(-(.-....((((((((((....))))))).)))...-..))).---------------------))...))))).)))))))..))).. ( -21.10) >DroYak_CAF1 10130 94 - 1 CACUAACUCGUGCC-UUUUAUUUUCUCUG-U-UU-UUUGCAGUUUUCAAUCAAUUGAAAAUCUGACU-CUGACU---------------------AGUGUGAAAGCAAAAGCAUAAGUAU .....(((..(((.-((((.(((((.(((-(-(.-....((((((((((....))))))).)))...-..))).---------------------))...))))).)))))))..))).. ( -21.10) >DroMoj_CAF1 10687 113 - 1 CGCUAACUCGUGCCAUUUUGUUUUCUUUA-U-UU-UUUGCAGUUUUCAAU--AUUGAAAAUCUGAAA-AUCAGUAUAUUGAAUAUAUACGUCCAGAGUGUGAAAACAA-AUCAUAAGUAU .....(((..((....(((((((((..((-(-((-(...(((((((((..--..)))))).)))...-....((((((.....))))))....)))))).))))))))-).))..))).. ( -23.00) >DroAna_CAF1 7274 96 - 1 CACUAACCCGUGCC-UUUUCUUUUCUCUA-U-CUUUUUGCAGUUUUCAAUCAAUUGAAAAUCUGACUAAUGACU---------------------AGUGUGAUAUCAAAUGCAUAAGUAU .....((..((((.-(((.....((.(((-(-(......((((((((((....))))))).)))......)).)---------------------))...))....))).))))..)).. ( -13.50) >consensus CACUAACUCGUGCC_UUUUAUUUUCUCUG_U_UU_UUUGCAGUUUUCAAUCAAUUGAAAAUCUGACU_CUGACU_____________________AGUGUGAAAGCAAAAGCAUAAGUAU .....(((.((((..........................((((((((((....))))))).))).................................(((....)))...)))).))).. (-12.42 = -12.92 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:50 2006