Locus 252

Sequence ID 2L_DroMel_CAF1
Location 730,664 – 730,782
Length 118
Max. P 0.554571
window404

overview

Window 4

Location 730,664 – 730,782
Length 118
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.15
Mean single sequence MFE -34.16
Consensus MFE -30.44
Energy contribution -30.28
Covariance contribution -0.16
Combinations/Pair 1.03
Mean z-score -1.21
Structure conservation index 0.89
SVM decision value 0.04
SVM RNA-class probability 0.554571
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 730664 118 + 22407834
CGGUUCAUUAUGCUGGUCUGCAAAAA--GCUACACUUCCUUCACACUUUCGGUUUUUAAUUGCAGCCGAAAAUUUGGAACGGCGACCGGCAGAGCGAAUCCAGCUGCAAUGCGAUGAUCA
.(((((....((((((((((((((((--(((...................))))))...)))))((((...........))))))))))))....)))))..((......))........ ( -31.41)
>DroSec_CAF1 2176 120 + 1
CGGUUCAUUAUGCUGGUCUGCAAAAAAGGCUACACUUCCUUCACACUUUCGGUUUUUAAUUGCAGCCGAAAAUUUGGAAUUGCGACCAGCAGAGCGAAUCCAGCUGCAAUGCGAUGAUCA
.(((((....((((((((.((((..(((......)))..((((.(.((((((((.........)))))))).).)))).))))))))))))....)))))..((......))........ ( -34.40)
>DroSim_CAF1 2176 120 + 1
CGGUUCAUUAUGCUGGUCUGCAAAAAAGGCUACACUUCCUUCACACUUUCGGUUUUUAAUUGCAGCCGAAAAUUUGGAACGGCGACCGGCAGAGCGAAUCCAGCUGCAAUGCGAUGAUCA
.(((((....(((((((((((((.(((((((...................)))))))..)))))((((...........))))))))))))....)))))..((......))........ ( -32.21)
>DroEre_CAF1 2203 118 + 1
CGGUUCGUUAUGCUGGUCUGCAAAAA--GCCGCACUUCCUUCACACUUUCGGUUUUUAAUUGCAGCCGAAAAUUUGGAACAGCGACCGGCAGAGCGAAUCCAGCUGCAAUGCGAUGAUCA
.((((((((.((((((((.((.....--)).((..((((.......((((((((.........))))))))....))))..)))))))))).))))))))..((......))........ ( -39.20)
>DroYak_CAF1 2215 118 + 1
CGGUUCAUUAUGCUGGUCUGCAAAGA--GCUGCACUUCCUUCACACUUUCGGUUUUUAAUUGCAGCCGAAAAUUUGGAACAGCGACCGGCAGAGCGAAUCCAGCUGCAAUGCGAUGAUCA
.(((((....((((((((.((.....--)).((..((((.......((((((((.........))))))))....))))..))))))))))....)))))..((......))........ ( -33.60)
>consensus
CGGUUCAUUAUGCUGGUCUGCAAAAA__GCUACACUUCCUUCACACUUUCGGUUUUUAAUUGCAGCCGAAAAUUUGGAACAGCGACCGGCAGAGCGAAUCCAGCUGCAAUGCGAUGAUCA
.(((((....((((((((.((.......)).....((((.......((((((((.........))))))))....))))....))))))))....)))))..((......))........ (-30.44 = -30.28 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:14 2006