Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,963,734 – 6,963,829 |
Length | 95 |
Max. P | 0.590321 |
Location | 6,963,734 – 6,963,829 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 89.12 |
Mean single sequence MFE | -23.48 |
Consensus MFE | -21.08 |
Energy contribution | -20.81 |
Covariance contribution | -0.27 |
Combinations/Pair | 1.25 |
Mean z-score | -1.30 |
Structure conservation index | 0.90 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.590321 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6963734 95 - 22407834 CGCACACUCACGAUGUCUGGCCUCAAGAAAUUCCAAAACACUGAGGAAUGGCGUCAGAAACUCCGUCAGUUUCUAAUGACCGAGCGGUAAAUACA (((.(..(((.((((((...(((((................)))))...))))))(((((((.....)))))))..)))..).)))......... ( -24.79) >DroVir_CAF1 5708 95 - 1 GACACAGUCAAUAUGUCUGGCCUGGAAAAAUUUCAAGACACUCCGGCUUGGCGUCAGAAAUUGCUUAAGCAUUUGCUUCUGGAUCGGUAAAUAGA .((.(.(((...(((((.((((.(((...............))))))).)))))(((((..(((....))).....)))))))).)))....... ( -20.36) >DroSec_CAF1 4562 95 - 1 CGCACACUCACGAUGUCUGGCCUCAAGAAAUUCCAAAACACUGAGGAAUGGCGUCAGAAACUCCGUCAGUUUCUAAUGACCGAGCGGUAAAUACA (((.(..(((.((((((...(((((................)))))...))))))(((((((.....)))))))..)))..).)))......... ( -24.79) >DroSim_CAF1 3758 95 - 1 CGCACACUCACGAUGUCUGGCCUCAAGAAAUUCCAAAACACUGAGGAAUGGCGUCAGAAACUCCGUCAGUUUCUAAUGACCGAGCGGUAAAUACA (((.(..(((.((((((...(((((................)))))...))))))(((((((.....)))))))..)))..).)))......... ( -24.79) >DroEre_CAF1 4539 95 - 1 CGCACACUCACGAUGUCUGGCCUCAAGAAAUUCCAAAACACUGAGGAAUGGCGUCAGAAACUCCGCCAGUUCCUAAUGACCGAGCGGUAAAUACA ...........((((((...(((((................)))))...)))))).......(((((.(((......))).).))))........ ( -21.39) >DroYak_CAF1 4541 95 - 1 CGCACACUCACGAUGUCUGGCCUCAAGAAAUUCCAAAACACUGAGGAAUGGCGUCAGAAACUCCGUCAGUUUCUAAUGACCGAGCGGUAAAUACA (((.(..(((.((((((...(((((................)))))...))))))(((((((.....)))))))..)))..).)))......... ( -24.79) >consensus CGCACACUCACGAUGUCUGGCCUCAAGAAAUUCCAAAACACUGAGGAAUGGCGUCAGAAACUCCGUCAGUUUCUAAUGACCGAGCGGUAAAUACA .((.(.(((..((((((...(((((................)))))...))))))(((((((.....))))))).......))).)))....... (-21.08 = -20.81 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:49 2006