Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,962,681 – 6,962,794 |
Length | 113 |
Max. P | 0.579462 |
Location | 6,962,681 – 6,962,794 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 75.30 |
Mean single sequence MFE | -26.37 |
Consensus MFE | -6.47 |
Energy contribution | -7.23 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.48 |
Mean z-score | -2.56 |
Structure conservation index | 0.25 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.579462 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6962681 113 + 22407834 UCCUCUAUAUCG------UCCUCUUCCUCCUCGACCUCAUCCUUCGGAAGUGAGGCCAGCUCUCUAAGACUGCCAUGAAGAUCGCUUAAGAGCUCCAGCUCCUCUCCCUUGGACAUUCC ...........(------((((((((........((((((.(....)..)))))).(((.((.....)))))....)))))........((((....)))).........))))..... ( -25.80) >DroSec_CAF1 3509 113 + 1 UCCUCUAUAUCG------UCCUCUUCCUCCUCGACUUCAUCCUUCGGAUGCGAGGCAAGCUCUCUUAGACUGCCAUGAAGAUCGCUUAAGAGCUCCAGCUCCUCUCCCUUGGACAUUCC ...........(------((((((((....(((....(((((...))))))))((((..((.....))..))))..)))))........((((....)))).........))))..... ( -27.10) >DroEre_CAF1 3524 113 + 1 UCUUCUAUCUCG------UCCUCUUCCUCCUCCACUUCCUCCUGCGGAAGUGAGGCAAGCUCUUUUAGACUGACAUGAAGAUCGCUUAAAAGCUCCAACUCCUCUCCCUUAGACAUUCC ...........(------((.(((((..((((.((((((......))))))))))..((.((.....)))).....)))))..(((....)))..................)))..... ( -21.90) >DroYak_CAF1 3504 113 + 1 UCCUCUACAUCG------UCCUCUUCCUCCUCCACUUCCUCCUGCGGAAGUGAGGCAAGCUCUCUUAGACUGCCAUGAAGAUCGCUUAAAAGCUCCAGCUCCUCCCCCUUGGACAUUCC ...........(------((((((((......(((((((......))))))).((((..((.....))..))))..)))))..(((....))).................))))..... ( -29.40) >DroAna_CAF1 1125 119 + 1 UUUUCUACAUAAUCGGAUUCCUGUUCCUCCUCUACUGGCUCAUUCUGCUCCUUCGUUAGCUCUUUUAGGCUACCGUGGAGAUCGCUUAGGAGCUCCAGUUCUUCGCCCUUUGACAUUCC ..............(((((((((......((((((.(((.......))).....(.(((((......))))).)))))))......)))))).)))....................... ( -24.70) >DroPer_CAF1 3455 107 + 1 UUCUCAACAUCA------UCCGAUUCAUCAUC------AUUUUUGGAGGGAGACGCCAGCUCUAUUAAGCUGCCAUGCAAAUCACCCAGCAGCUCGCGCUCUUCUUCCUUGGACAUGUU .....(((((..------((((((.....)))------......((((((((((((.((((.......((((...((.....))..)))))))).))).)))))))))..))).))))) ( -29.31) >consensus UCCUCUACAUCG______UCCUCUUCCUCCUCCACUUCAUCCUUCGGAAGUGAGGCAAGCUCUCUUAGACUGCCAUGAAGAUCGCUUAAGAGCUCCAGCUCCUCUCCCUUGGACAUUCC .......................................(((...(((...((((..(((((((((((.................)))))))....)))))))))))...)))...... ( -6.47 = -7.23 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:48 2006