Locus 2515

Sequence ID 2L_DroMel_CAF1
Location 6,943,396 – 6,943,499
Length 103
Max. P 0.998606
window4023

overview

Window 3

Location 6,943,396 – 6,943,499
Length 103
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 97.48
Mean single sequence MFE -24.52
Consensus MFE -23.28
Energy contribution -23.24
Covariance contribution -0.04
Combinations/Pair 1.04
Mean z-score -2.13
Structure conservation index 0.95
SVM decision value 3.16
SVM RNA-class probability 0.998606
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6943396 103 - 22407834
UAAUUCAUUGGAUAUGACUCAUUGCUUAUCGAGUAAGGCUGAUCAGAACUUGAUAUACACACAUACUUGUGUGGAGUUUAAAUAUGAAUAAAGUAUAGCCACU
..((((((.......(((((......((((((((....((....)).))))))))..((((((....))))))))))).....)))))).............. ( -24.40)
>DroSec_CAF1 10559 103 - 1
UAAUUCAUUGGAUAUGACUCAUUGCUUAUCGAGUAAGGCUGAUCAGAACUUGAUAUACACGCAUACUUGUGUGGAGUUUAAAUAUGAAUAAAGUAUAGCCACU
..((((((.......(((((......((((((((....((....)).))))))))..((((((....))))))))))).....)))))).............. ( -24.00)
>DroSim_CAF1 10533 103 - 1
UAAUUCAUUGGAUAUGACUCAUUGCUUAUCGAGUAAGGCUGAUCAGAACUUGAUAUACACGCAUACUUGUGUGGAGUUUAAAUAUGAAUAAAGUAUAGCCACU
..((((((.......(((((......((((((((....((....)).))))))))..((((((....))))))))))).....)))))).............. ( -24.00)
>DroEre_CAF1 10907 103 - 1
UAAUUCAUUCGAUAUGAGUCAUUUCUUAUCGAGUAAGGCUGAUCAGAACUUGAUAUACACACAUACUUGUGUGGAGUUGAAAUAUGAAUAAAGUAUAGCCACU
......((((((((.(((....))).))))))))..((((((((((...)))))...((((((....))))))......................)))))... ( -25.80)
>DroYak_CAF1 11590 103 - 1
UAAUUCAUUGGAUAUGACUCAUUGCUUAUCGAGUAAGGCUGAUCAGAACUUGAUAUACACACAUACUUGUGUGGAGUUUAAAUAUGAAUAAAGUAUAGUCACU
..((((((.......(((((......((((((((....((....)).))))))))..((((((....))))))))))).....)))))).............. ( -24.40)
>consensus
UAAUUCAUUGGAUAUGACUCAUUGCUUAUCGAGUAAGGCUGAUCAGAACUUGAUAUACACACAUACUUGUGUGGAGUUUAAAUAUGAAUAAAGUAUAGCCACU
..((((((.......(((((......((((((((....((....)).))))))))..((((((....))))))))))).....)))))).............. (-23.28 = -23.24 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:42 2006