| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,939,021 – 6,939,115 |
| Length | 94 |
| Max. P | 0.603381 |
| Location | 6,939,021 – 6,939,115 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 83.51 |
| Mean single sequence MFE | -43.87 |
| Consensus MFE | -28.00 |
| Energy contribution | -28.03 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.43 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.603381 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6939021 94 + 22407834 CAGGGA---------GGUGCUGCUGCUGUUACUGCUGGACGCCGUCGUGGUGGAAGCCACCGCCACUUUCUUUGGCGGUAGGGCAGCUCGCUUCUGUUCGGCU ...(((---------((((..((((((.(((((((..((....((.(((((((...))))))).))....))..))))))))))))).)))))))........ ( -43.00) >DroSec_CAF1 6362 91 + 1 CAGGGA---------GGUGCUGCUGCUG---CUGCUGGACGACGUCGUGGUGGAAGCCACCGCCACUUUCUUAGGCGGCAGGGCAGCUCGCUUCUGCUCGGCU ..((((---------((.((((((.(((---(((((.(((...)))(((((((......))))))).......)))))))))))))).).)))))........ ( -43.20) >DroSim_CAF1 6341 91 + 1 CAGGGA---------GGUGCUGCUGCUG---CUGCUGGACGACGUCGUGGUGGAAGCCACCGCCACUUUCUUUGGCGGCAGGGCAGCUCGCUUCUGCUCGGCU ..((((---------((.((((((.(((---((((..((.((.((.(((((((...))))))).)).)).))..))))))))))))).).)))))........ ( -46.10) >DroEre_CAF1 6701 91 + 1 CAGAGA---------GGUGCUGCUGCUG---CUGCUGGACGACGUCGUGGUGGAAGCCACCGCCACUUUCUUUGGCGGCAGUGCGGCACGCUUCUGCUCGGCU (((((.---------.(((((((.((((---((((..((.((.((.(((((((...))))))).)).)).))..)))))))))))))))..)))))....... ( -48.70) >DroYak_CAF1 6671 91 + 1 CAGAGA---------GGUGCUGCUACUG---CUGCUGGACGAUGUCGUGGUGGAUGCCACCGCUACUUUCUUGGGCGGCAGAGCGGCUCGCUUCAGCUCGGCU ....((---------(((((((((.(((---(((((.((.((.((.(((((((...))))))).))..)))).))))))))))))))..)))))......... ( -44.40) >DroAna_CAF1 5907 100 + 1 UAGGGUAGAGCUGUUGGUGGUGCUACUG---CUGCUGGCAGUUGUUGUGGUUGCUGCAACUGACACCUUCUUGGGCGGUAGGGCGGCGCGUUUCUGUUCGGAU ..(..(((((.(((..((.((.((((((---(...((.(((((((.((....)).))))))).))((.....))))))))).)).))))).)))))..).... ( -37.80) >consensus CAGGGA_________GGUGCUGCUGCUG___CUGCUGGACGACGUCGUGGUGGAAGCCACCGCCACUUUCUUUGGCGGCAGGGCAGCUCGCUUCUGCUCGGCU ................(.((((((.(((...((((..((.((.((.(((((((...))))))).)).)).))..))))))))))))).)(((.......))). (-28.00 = -28.03 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:39 2006