Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,928,047 – 6,928,148 |
Length | 101 |
Max. P | 0.508112 |
Location | 6,928,047 – 6,928,148 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 92.63 |
Mean single sequence MFE | -25.34 |
Consensus MFE | -20.18 |
Energy contribution | -20.62 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.05 |
Mean z-score | -1.39 |
Structure conservation index | 0.80 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.508112 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6928047 101 + 22407834 AUCAGUUGACCAGCUGAUCGAAAGGCAAAGGAGUUUGAAGU--ACAUGUAUGAAAAGAAAUGCUUUUGACUUUGGUCAACUUUAUAUUUCGAUCGGCAUUUCU ............(((((((((((...((((..(.(..((((--.((.((((........))))...))))))..).)..))))...)))))))))))...... ( -29.30) >DroSec_CAF1 12113 101 + 1 AUCAGUUGACCAGCUGAUCGAUCGGCAAAGGAGUUUGAAGU--ACAUGUAUGGAAAGAAAUGCUUUUGACUUUGGUCAACUUUAUAUUUCGAUCGGCAUUUCC ............(((((((((.....((((..(.(..((((--.((.((((........))))...))))))..).)..)))).....)))))))))...... ( -26.60) >DroSim_CAF1 12514 101 + 1 AUCAGUUGACCAGCUGAUCGAUCGGCAAAGGAGUUUUAAGU--ACAUGUAUGGAAAGAAAUGCUUUUGACUUUGGUCAACUUUAUAUUUCGAUCGGCAUUUCC ...((((((((.(((((....)))))...((((((..((((--(......(....)....)))))..))))))))))))))...................... ( -24.90) >DroEre_CAF1 13655 101 + 1 AUCAGCUGACCAACUGAUCGAUCGGCUAAGGAGUUUGAAGU--ACAUGUAUGGAGAAAAAUGCUUUUGACUUUGGUCAAUUUUAUGUUUCUAUCGGCAUUUUA ....(((((....((((....))))...(((((..((((((--....((((........))))...((((....))))))))))..))))).)))))...... ( -19.40) >DroYak_CAF1 12201 103 + 1 AUCAGUUGACCAGCUGAUCGAUCGGCUAAGGAGUUUGAAGUAUACAUGUAUGGAAAGAAAUGCUUUUGACAUUGGUCAACUUUAUGUUUCGAUCGGCAUUUCC ............(((((((((..((((((...(((.(((((((...(........)...))))))).))).))))))(((.....))))))))))))...... ( -26.50) >consensus AUCAGUUGACCAGCUGAUCGAUCGGCAAAGGAGUUUGAAGU__ACAUGUAUGGAAAGAAAUGCUUUUGACUUUGGUCAACUUUAUAUUUCGAUCGGCAUUUCC ............(((((((((......(((..(.(..((((......((((........)))).....))))..).)..)))......)))))))))...... (-20.18 = -20.62 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:37 2006