Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 728,032 – 728,129 |
Length | 97 |
Max. P | 0.790795 |
Location | 728,032 – 728,129 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 97.55 |
Mean single sequence MFE | -29.58 |
Consensus MFE | -26.94 |
Energy contribution | -26.94 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.39 |
Structure conservation index | 0.91 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.790795 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 728032 97 + 22407834 GCGAAUAGAACUGCAAAUGGGCA--GACUCCACCCAGAAUGUCGGGGCUUAUUAGCUGCACGCUAAUUUAUUCCGGCAAACAGAAGGCACGGCUUCUGU (((........)))...((((..--.......))))...((((((((...((((((.....))))))...)))))))).(((((((......))))))) ( -29.30) >DroSec_CAF1 106609 97 + 1 GCGAAUAGAACUGCAAAUGGGCA--GACUCCACCCAGAACGUCGGGGCUUAUUAGCUGCACGCUAAUUUAUUCCGGCAAACAGAAGGCACGGCUUCUGU (((........)))...((((..--.......))))....(((((((...((((((.....))))))...)))))))..(((((((......))))))) ( -28.60) >DroSim_CAF1 111826 97 + 1 GCGAAUAGAACUGCAAAUGGGCA--GACUCCACCCAGAACGUCGGGGCUUAUUAGCUGCACGCUAAUUUAUUCCGGCAAACAGAAGGCACGGCUUCUGU (((........)))...((((..--.......))))....(((((((...((((((.....))))))...)))))))..(((((((......))))))) ( -28.60) >DroEre_CAF1 117479 97 + 1 CCGAAUAGAACUGCAAAUGGGCA--GACUCCACCCAGAACGUCGGGGUUUAUUAGCUGCACGCUAAUUUAUUCCGGCAAACAGAAGGCACGGCUUCUGU ..........((((......)))--)..............((((((((..((((((.....))))))..))))))))..(((((((......))))))) ( -31.40) >DroYak_CAF1 112932 99 + 1 CCGAAUAGAACUGCAAAUGGGCAAAGACUCCACCCAGAACGUCGGGGUUUAUUAGCUGCACGCUAAUUUAUUCCGGCAAACAGAAGGCACGGCUUCUGU .................((((...........))))....((((((((..((((((.....))))))..))))))))..(((((((......))))))) ( -30.00) >consensus GCGAAUAGAACUGCAAAUGGGCA__GACUCCACCCAGAACGUCGGGGCUUAUUAGCUGCACGCUAAUUUAUUCCGGCAAACAGAAGGCACGGCUUCUGU .................((((...........))))....(((((((...((((((.....))))))...)))))))..(((((((......))))))) (-26.94 = -26.94 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:13 2006