Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,918,841 – 6,918,938 |
Length | 97 |
Max. P | 0.988141 |
Location | 6,918,841 – 6,918,938 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 75.15 |
Mean single sequence MFE | -21.36 |
Consensus MFE | -9.32 |
Energy contribution | -10.12 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.27 |
Mean z-score | -2.42 |
Structure conservation index | 0.44 |
SVM decision value | 2.11 |
SVM RNA-class probability | 0.988141 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6918841 97 + 22407834 CGUAGGAGGGUGUCUUGCAGCCGCCUGCUACCCUUUUGU---------------UUACCACUUAUUUUAAUUUGUCUAUUUCUAAUCAAAUCAAUCAAACUUUAAUAUCAAU ..((((((((((....((((....)))))))))))))).---------------.......................................................... ( -14.20) >DroSec_CAF1 3869 95 + 1 CGUAGGAGGGAGGCUUACAGCCGCCUGCUACCCUUUUGU---------------UUACCACUUAUUUAAAUUUGUUUAAUUCGAAUACA--GAAUCAAACUUAAAUAUCAAU .((((.(((..(((.....))).))).))))........---------------........(((((((....((((.((((.......--)))).)))))))))))..... ( -20.70) >DroSim_CAF1 3869 110 + 1 CGUAGGAGGGAGGCUUACAGCCGCCUGCUACCCUUUGGUAAAUAAGUGGUAAACAUACCACUUAUUUAAAUUUGUUUAAUUCUAAUACA--GAAUCAAACUUAAAUAUCAGU .((((.(((..(((.....))).))).))))...(((((((((((((((((....))))))))))).......((((.(((((.....)--)))).)))).....)))))). ( -35.00) >DroEre_CAF1 3989 94 + 1 CGUAGU-GGGUGGCUUACAGUCGCCAGCUACCCUUUUAU---------------UAACCACUUCUUUCAAUUUGUUUAAUUAUAAUUCA--CAAUCAAACUUAAAUUUGAAU .(((((-.((((((.....)))))).)))))........---------------...................................--...(((((......))))).. ( -17.00) >DroYak_CAF1 3944 90 + 1 CAGAGGAAGGUGGC-UACAGCCGCCUUUUACCCUGUUAU---------------UGAGCACUUAUUUCAAUUUGUUUAAUUCAAAAUCA--CG----AACAUAUAUUUAAAU (((.((((((((((-....))))))))...)))))..((---------------((((((..(......)..)))))))).........--..----............... ( -19.90) >consensus CGUAGGAGGGUGGCUUACAGCCGCCUGCUACCCUUUUGU_______________UUACCACUUAUUUAAAUUUGUUUAAUUCUAAUACA__CAAUCAAACUUAAAUAUCAAU .((((..(((((((.....))))))).))))................................................................................. ( -9.32 = -10.12 + 0.80)
Location | 6,918,841 – 6,918,938 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 75.15 |
Mean single sequence MFE | -23.14 |
Consensus MFE | -8.52 |
Energy contribution | -10.48 |
Covariance contribution | 1.96 |
Combinations/Pair | 1.21 |
Mean z-score | -2.23 |
Structure conservation index | 0.37 |
SVM decision value | 1.55 |
SVM RNA-class probability | 0.963017 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6918841 97 - 22407834 AUUGAUAUUAAAGUUUGAUUGAUUUGAUUAGAAAUAGACAAAUUAAAAUAAGUGGUAA---------------ACAAAAGGGUAGCAGGCGGCUGCAAGACACCCUCCUACG ..................((((((((.(((....))).)))))))).....((((...---------------.....(((((.((((....)))).....))))).)))). ( -17.80) >DroSec_CAF1 3869 95 - 1 AUUGAUAUUUAAGUUUGAUUC--UGUAUUCGAAUUAAACAAAUUUAAAUAAGUGGUAA---------------ACAAAAGGGUAGCAGGCGGCUGUAAGCCUCCCUCCUACG .....((((((((((((((((--.......)))))))))....)))))))........---------------........((((.(((.(((.....)))..))).)))). ( -21.60) >DroSim_CAF1 3869 110 - 1 ACUGAUAUUUAAGUUUGAUUC--UGUAUUAGAAUUAAACAAAUUUAAAUAAGUGGUAUGUUUACCACUUAUUUACCAAAGGGUAGCAGGCGGCUGUAAGCCUCCCUCCUACG ............(((((((((--((...))))))))))).....(((((((((((((....))))))))))))).......((((.(((.(((.....)))..))).)))). ( -37.30) >DroEre_CAF1 3989 94 - 1 AUUCAAAUUUAAGUUUGAUUG--UGAAUUAUAAUUAAACAAAUUGAAAGAAGUGGUUA---------------AUAAAAGGGUAGCUGGCGACUGUAAGCCACCC-ACUACG .(((((.(((..(((((((((--((...)))))))))))))))))))....(((((..---------------......((((.(((.((....)).))).))))-))))). ( -21.90) >DroYak_CAF1 3944 90 - 1 AUUUAAAUAUAUGUU----CG--UGAUUUUGAAUUAAACAAAUUGAAAUAAGUGCUCA---------------AUAACAGGGUAAAAGGCGGCUGUA-GCCACCUUCCUCUG ............(((----((--......))))).......(((((.........)))---------------))..(((((...((((.(((....-))).)))).))))) ( -17.10) >consensus AUUGAUAUUUAAGUUUGAUUG__UGAAUUAGAAUUAAACAAAUUGAAAUAAGUGGUAA_______________ACAAAAGGGUAGCAGGCGGCUGUAAGCCACCCUCCUACG ............(((((((((.........)))))))))..........................................((((.(((.(((.....)))..))).)))). ( -8.52 = -10.48 + 1.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:33 2006