Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,913,648 – 6,913,756 |
Length | 108 |
Max. P | 0.798754 |
Location | 6,913,648 – 6,913,756 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 79.26 |
Mean single sequence MFE | -37.62 |
Consensus MFE | -23.92 |
Energy contribution | -24.95 |
Covariance contribution | 1.03 |
Combinations/Pair | 1.30 |
Mean z-score | -1.77 |
Structure conservation index | 0.64 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.798754 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6913648 108 + 22407834 CACCUUUUGGCAUGGCGGCGACAUGGACACGUCCCCGUCGCCGCCUUCUUUGCCUAUCUUACUGUCCAGCUGCUGCUC-CUCACCGGAGGAUAGCUUCGGCCGCUGCUG ........((((.(((((((((..(((....)))..))))))))).....))))............((((.((...((-(((....)))))..((....)).)).)))) ( -47.00) >DroSec_CAF1 1898 108 + 1 CACCUUUUGGCAUGGCGGCGACAUGGACACGUCUCCGUCGCCACCUUCUUCGCCUAACUUACUCCCCAGCUGCUGCUC-CUCGCCGGAGGAUAGCUUCGGCCGCUGCUG ........(((..((.((((((..(((....)))..)))))).))......)))............((((.((...((-(((....)))))..((....)).)).)))) ( -37.80) >DroSim_CAF1 1914 108 + 1 CACCUUUUGGCAUGGCGGCGACAUGGACACGUCUCCGUCGCCACCUCCUUCGCCUAACUUACUCCCCAGCUGCUGCUC-CUCGCCGGAGGAUAGCUUCGGCCGCUGCUG ........(((..((.((((((..(((....)))..)))))).))......)))............((((.((...((-(((....)))))..((....)).)).)))) ( -37.80) >DroEre_CAF1 1950 108 + 1 CACCUUUUGGCAUGGCGGCGACAUGGACACGUCCGCGUCGCCGCCUCCUUCGCCAAUCUUACUGUCCAGCUGCUGCUC-CUGGACGGAGGAUAGCUUCUGCCGUUGCUG ........((((.(((((((((.((((....)))).)))))))))......((..(((((.((((((((.........-))))))))))))).))...))))....... ( -48.70) >DroYak_CAF1 1901 108 + 1 CACCUUCUGGCAUGGCGGCGACAUGGACACGUCCCCGUCGCCGACUCCUUCGCCCAUCUUACUGCCCAGCUGCUGCUC-CUCGACAAAGGAUAACUUCUGCCGCUGCUG ........((((.(((((((((..(((....)))..))))))((.....)))))........))))((((.((.((((-((......))))........)).)).)))) ( -33.50) >DroAna_CAF1 1790 90 + 1 CACCUUCUGGCACGGCGGCGACAUGGAAACAUCCCCAUUCCCAG------------AGGUACU----AGUG---GCUCCCUGCUCAAUGGACAUCUUUUUCUUUGGUUG .((((.((((...((.((....(((....)))))))....))))------------)))).((----(.((---((.....)).)).)))................... ( -20.90) >consensus CACCUUUUGGCAUGGCGGCGACAUGGACACGUCCCCGUCGCCACCUCCUUCGCCUAACUUACUGCCCAGCUGCUGCUC_CUCGCCGGAGGAUAGCUUCGGCCGCUGCUG ........((((((((((((((..(((....)))..))))))...(((((((...............(((....))).......)))))))........)))).)))). (-23.92 = -24.95 + 1.03)
Location | 6,913,648 – 6,913,756 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 79.26 |
Mean single sequence MFE | -40.53 |
Consensus MFE | -26.19 |
Energy contribution | -27.80 |
Covariance contribution | 1.61 |
Combinations/Pair | 1.19 |
Mean z-score | -1.30 |
Structure conservation index | 0.65 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.537996 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6913648 108 - 22407834 CAGCAGCGGCCGAAGCUAUCCUCCGGUGAG-GAGCAGCAGCUGGACAGUAAGAUAGGCAAAGAAGGCGGCGACGGGGACGUGUCCAUGUCGCCGCCAUGCCAAAAGGUG ((((.(((((....))).(((((....)))-))...)).))))............((((.....((((((((((.(((....))).)))))))))).))))........ ( -46.60) >DroSec_CAF1 1898 108 - 1 CAGCAGCGGCCGAAGCUAUCCUCCGGCGAG-GAGCAGCAGCUGGGGAGUAAGUUAGGCGAAGAAGGUGGCGACGGAGACGUGUCCAUGUCGCCGCCAUGCCAAAAGGUG ..(((...(((..((((.(((.(((((...-........))))))))...)))).)))......((((((((((..((....))..)))))))))).)))......... ( -44.10) >DroSim_CAF1 1914 108 - 1 CAGCAGCGGCCGAAGCUAUCCUCCGGCGAG-GAGCAGCAGCUGGGGAGUAAGUUAGGCGAAGGAGGUGGCGACGGAGACGUGUCCAUGUCGCCGCCAUGCCAAAAGGUG ..(((...(((..((((.(((.(((((...-........))))))))...)))).)))......((((((((((..((....))..)))))))))).)))......... ( -44.10) >DroEre_CAF1 1950 108 - 1 CAGCAACGGCAGAAGCUAUCCUCCGUCCAG-GAGCAGCAGCUGGACAGUAAGAUUGGCGAAGGAGGCGGCGACGCGGACGUGUCCAUGUCGCCGCCAUGCCAAAAGGUG .......((((...((((((..(.((((((-.........)))))).)...)).))))......((((((((((.(((....))).)))))))))).))))........ ( -46.60) >DroYak_CAF1 1901 108 - 1 CAGCAGCGGCAGAAGUUAUCCUUUGUCGAG-GAGCAGCAGCUGGGCAGUAAGAUGGGCGAAGGAGUCGGCGACGGGGACGUGUCCAUGUCGCCGCCAUGCCAGAAGGUG ..(((..(((.((.....(((((((((.(.-..((.((......)).))....).))))))))).))(((((((.(((....))).)))))))))).)))......... ( -42.10) >DroAna_CAF1 1790 90 - 1 CAACCAAAGAAAAAGAUGUCCAUUGAGCAGGGAGC---CACU----AGUACCU------------CUGGGAAUGGGGAUGUUUCCAUGUCGCCGCCGUGCCAGAAGGUG ..(((...((........))..(((.(((.((...---..((----((.....------------))))....((.(((((....))))).)).)).))))))..))). ( -19.70) >consensus CAGCAGCGGCAGAAGCUAUCCUCCGGCGAG_GAGCAGCAGCUGGGCAGUAAGAUAGGCGAAGGAGGCGGCGACGGGGACGUGUCCAUGUCGCCGCCAUGCCAAAAGGUG ......((((.(..(((...(((....)))..)))..).)))).....................((((((((((.(((....))).))))))))))..(((....))). (-26.19 = -27.80 + 1.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:32 2006