Locus 2506

Sequence ID 2L_DroMel_CAF1
Location 6,903,537 – 6,903,627
Length 90
Max. P 0.835622
window4009

overview

Window 9

Location 6,903,537 – 6,903,627
Length 90
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 79.75
Mean single sequence MFE -27.37
Consensus MFE -21.79
Energy contribution -20.77
Covariance contribution -1.02
Combinations/Pair 1.31
Mean z-score -1.54
Structure conservation index 0.80
SVM decision value 0.73
SVM RNA-class probability 0.835622
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6903537 90 - 22407834
-----------------------AGCUCACCUUUAGAACGGCAAAUAUCUCGUUCAGAUGAUAGUGAAAGUUGUUUCGCACAAAAGUGCGCAGGAUGCGAUCCCGUCGCGUCU
-----------------------.((.(((.(((.((((((........))))))........((((((....))))))..))).))).)).(((((((((...))))))))) ( -27.20)
>DroSim_CAF1 95582 90 - 1
-----------------------AGCUCACCUUCAGAACGGCAAAUAUCUCGUUCAGAUGAUAGUGAAAGUUGUUUCGCACAAAAGUGCGCAGGAUGCGAUCCCGUCGCGUCU
-----------------------.((((((..(((((((((........))))))...)))..))))..........((((....)))))).(((((((((...))))))))) ( -29.40)
>DroEre_CAF1 102179 102 - 1
-----------GGGCAUUAAGUGGUCUCACCUUCAAAACGGCAAAUAUCUCGUUCAGAUGGUAGUGAAAGUUGUUUCGCACAAAAGUGCGCAGGAUGCGAUCCCGUCGCGUCU
-----------(.(((((...((.....(((.((..(((((........)))))..)).))).((((((....)))))).))..))))).).(((((((((...))))))))) ( -30.00)
>DroWil_CAF1 113018 94 - 1
--------------UAUU-----AACCCACCUUUAAGACGGCAAAUAUCUCAUUCAAAUGAUAAUGGAAAUUAUUGCGCACAAAAGUGCGUAAAAUGCGAUCACGUCGCGUUU
--------------....-----...(((((........))....((((..........)))).)))......((((((((....))))))))((((((((...)))))))). ( -21.40)
>DroYak_CAF1 100406 102 - 1
-----------GGGCAUUAAGUGUGCUCACCUUCAAAACGGCAAAUAUCUCGUUCAGAUGAUAGUGAAAGUUAUUUCGCACAAAAGUGCGCAGGAUGCGAUCCCGUCGCGUCU
-----------(.(((((...(((((((((..(((.(((((........)))))....)))..))))..(......))))))..))))).).(((((((((...))))))))) ( -31.20)
>DroAna_CAF1 95958 111 - 1
CUUAAUAGUUUUGUCCUUAAA--AGCUUACCUUUAAGACGGCAAAUAUUUCGUUGAGAUGAUAGUGAAAAUUGUUGCGCACAAAAGUACGCAGGAUGCGAUCCCGUCGCGUUU
((((((...((((((((((((--........))))))..))))))......))))))..((((((....))))))(((.((....)).))).(((((((((...))))))))) ( -25.00)
>consensus
______________CAUU_____AGCUCACCUUCAAAACGGCAAAUAUCUCGUUCAGAUGAUAGUGAAAGUUGUUUCGCACAAAAGUGCGCAGGAUGCGAUCCCGUCGCGUCU
..........................((((..(((.(((((........)))))....)))..)))).........(((((....)))))..(((((((((...))))))))) (-21.79 = -20.77 +  -1.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:28 2006