Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,903,244 – 6,903,353 |
Length | 109 |
Max. P | 0.508995 |
Location | 6,903,244 – 6,903,353 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 79.51 |
Mean single sequence MFE | -36.27 |
Consensus MFE | -19.74 |
Energy contribution | -19.85 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.25 |
Mean z-score | -1.78 |
Structure conservation index | 0.54 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.508995 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6903244 109 - 22407834 UAGCUGAUCCAAGGGGCAAUGUGGUGCUGCCCAAAGGAUUGGCGCCAGGCGAUAUAACAGUGCCGUCCACAAAUGGAGCGAAGCCCACGAGAAAUCUGUAAUAUAAUA--A ..((..((((...(((((.........)))))...))))..))((..((((.........)))).((((....)))))).........((....))............--. ( -30.80) >DroVir_CAF1 136482 108 - 1 UAGCUGAGCCCAGGGGCAGGGCAGUGCUGGACAUGGCAUCCGUGUUGGGCGUUAUUACAGUGCCAUCCACAAAAGGAGCGAAGCCAACCAGAAAUCUAAAAGAAAGCA--- ..(((..(((....)))..(((...(((.(((((((...))))))).)))..........(((..(((......))))))..)))...................))).--- ( -32.30) >DroPse_CAF1 122264 109 - 1 UAGCUGACCCCAGGGGCAACGUGGUGCUGCCCAAGGGAUUGGCAACGGCCGAUAUAACAGUUCCAUCCACAAAUGGAGCGAAGCCGACCAGGAAUCUGAAAUGAAAGA--G ..((..(.(((..(((((.(.....).)))))..))).)..))..((((.(......).(((((((......)))))))...))))..(((....)))..........--. ( -35.20) >DroWil_CAF1 112712 109 - 1 UAGCUGAGCCCAUGGGUAGAGUGGUGCUACCCAUGGGAUUGGCACCAGGCGAUAUGACAGUUCCAUCCACGAAUGGUGCAAAACCCACCAGGAAACUGAAUUGGAAAU--U ........(((((((((((.......)))))))))))....((((((..((..(((.......)))...))..)))))).....(((.(((....)))...)))....--. ( -41.70) >DroAna_CAF1 95665 111 - 1 UAGCUGAACCCAGGGGCAGCGUGGUGCUGCCCAGGGGAUUGGCGCCGGGCGAUAUGACAGUUCCGUCCACAAAUGGAGCGAAACCCACCAGGAAUCUGCGGUUGAAAAUAG ..((..(.(((..(((((((.....)))))))..))).)..))((((.(.(((......(((((((......))))))).....((....)).)))).))))......... ( -43.80) >DroPer_CAF1 114863 109 - 1 UAGCUGACCCCAGGGGCAACGUGGUGCUGCCCAAGGGAUUGGCAACGGGCGAUAUAACAGUUCCAUCCACAAAUGGAGCGAAGCCGACCAGGAAUCUGAAAUGAAAGA--G ..((..(.(((..(((((.(.....).)))))..))).)..))....((((......).(((((((......)))))))...)))...(((....)))..........--. ( -33.80) >consensus UAGCUGACCCCAGGGGCAACGUGGUGCUGCCCAAGGGAUUGGCACCGGGCGAUAUAACAGUUCCAUCCACAAAUGGAGCGAAGCCCACCAGGAAUCUGAAAUGAAAAA__G ..(((((.(((..(((((.........)))))..))).)))))..(((...........((.((((......)))).))....((.....))...)))............. (-19.74 = -19.85 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:27 2006