Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,898,121 – 6,898,231 |
Length | 110 |
Max. P | 0.754888 |
Location | 6,898,121 – 6,898,231 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 70.53 |
Mean single sequence MFE | -35.40 |
Consensus MFE | -14.85 |
Energy contribution | -15.47 |
Covariance contribution | 0.62 |
Combinations/Pair | 1.24 |
Mean z-score | -1.84 |
Structure conservation index | 0.42 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.754888 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6898121 110 + 22407834 CAUCCCCGGGGCGUCGUCCUCGGCA------AAGUAGAAA--CUUUCUAAGCAGCGAUGACGCCGUGAAACUCACGUGGCCAAACCACCUGGGGCAUGGUACAUCAUUUUCAGAGAAU ((((((((((((((((((....((.------...((((..--...)))).))...)))))))))(((.....)))((((.....)))))))))).))).................... ( -40.10) >DroPse_CAF1 117743 113 + 1 UUU-UCCGGGUCGUGGAUUGUGGCGUGGUUGAAGUGAAAUCUCUUUACAAAUAGAGACAACAUCGUGAAGCACGG--U-ACGAGUUGCCUUU-AAGUGGUAGAACAUUUCCAGGAAAG .((-(((.((..(((..(((((.((((.((.(.(((...(((((........)))))...)))..).)).)))).--)-)))).(((((...-....)))))..)))..)).))))). ( -32.90) >DroSec_CAF1 96100 110 + 1 CAUCCCCGGGGCGUCGUCCUCGGCA------AAGUAGAAA--CUUUCUAAGCAGCGAUGACGCCGUGAAACUCACGUGGCCAAACCACCUGGGGCAUGGUACAUCAUUUUUAGAGAAU ((((((((((((((((((....((.------...((((..--...)))).))...)))))))))(((.....)))((((.....)))))))))).))).................... ( -40.10) >DroEre_CAF1 96662 110 + 1 CAUCCCCGGGGCGUCGUCCUCGGCA------AAGUAGAAA--CUUUCUAAGCAGCGAUGACGCCGUGAAACUCACGUGGGCAAACCACCUGGGCCAUGGAACAUAAUUUUUAGAGAAU (((.((((((((((((((....((.------...((((..--...)))).))...)))))))))(((.....)))((((.....)))))))))..))).................... ( -36.20) >DroYak_CAF1 94534 110 + 1 CAUCCCCGGGGCGUCGUCCUCGGCA------AAGUAGAAA--CUUUCUAAGCAGCGAUGACGGCGUGAAACUCACGUAGACCAAACACCUGGGCCAUGGAACAUAAUUUUUAGAGAAU (((.((((((.(((((((....((.------...((((..--...)))).))...)))))))(((((.....)))))..........))))))..))).................... ( -31.20) >DroPer_CAF1 110335 113 + 1 UUU-UCCGGGUCGUGGAUUGUGGCGUGGUUGAAGUGAAAUCUCUUUUCAAAUAGAGACAACAUCGUGAAACACGG--U-ACGAGUUGCCUUU-AAGUGGUAGAACAUUUCCAGGAAAG .((-(((.((..(((..(((((.((((..(((.((....(((((........)))))..)).))).....)))).--)-)))).(((((...-....)))))..)))..)).))))). ( -31.90) >consensus CAUCCCCGGGGCGUCGUCCUCGGCA______AAGUAGAAA__CUUUCUAAGCAGCGAUGACGCCGUGAAACUCACGUGGACAAACCACCUGGGACAUGGUACAUCAUUUUCAGAGAAU ....((((((((((((....))))..........(((((.....)))))....))........((((.....))))...........))))))......................... (-14.85 = -15.47 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:23 2006