Locus 250

Sequence ID 2L_DroMel_CAF1
Location 727,720 – 727,817
Length 97
Max. P 0.511669
window402

overview

Window 2

Location 727,720 – 727,817
Length 97
Sequences 4
Columns 97
Reading direction forward
Mean pairwise identity 94.67
Mean single sequence MFE -14.65
Consensus MFE -11.80
Energy contribution -12.80
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.76
Structure conservation index 0.81
SVM decision value -0.04
SVM RNA-class probability 0.511669
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 727720 97 + 22407834
CCUAAGUGCAAUUCAUCGUGCGAAAGUAAUGCCUUCUUGCGCGCUGUGCACCCAACAUUUUCAUCCCAUCUCCAUUUCCAUCUCCGCCUCAAACUCC
.....(((((...((.((((((((((......))).))))))).))))))).............................................. ( -16.20)
>DroSec_CAF1 106297 97 + 1
CUUAAUUGCAAUUCAUCGUGCGAAAGUAAUGCCUUCUUGCGCGCUGUGCACCCAACAUUUUCAUCCCAUCUCCAUUUCCAUCUCCGCCUCAAACUCC
......((((...((.((((((((((......))).))))))).))))))............................................... ( -13.20)
>DroSim_CAF1 111514 97 + 1
CUUAAUUGCAAUUCAUCGUGCGAAAGUAAUGCCUUCUUGCGCGCUGUGCACCCAACAUUUUCAUCCCAUCUCCAUUUCCAUCUCCGCCUCAAACUCC
......((((...((.((((((((((......))).))))))).))))))............................................... ( -13.20)
>DroYak_CAF1 112614 97 + 1
UUUAUGUGCAAUUCAUCGUGCGAAAGUAACGCCCUCUUGCGCACUGUGCACCCAGCAUUUUCAACCCAUCUCCAUUUCCAUCUCCGUCUCAAACUCC
....(((((((.....(((((....)).))).....)))))))..((((.....))))....................................... ( -16.00)
>consensus
CUUAAGUGCAAUUCAUCGUGCGAAAGUAAUGCCUUCUUGCGCGCUGUGCACCCAACAUUUUCAUCCCAUCUCCAUUUCCAUCUCCGCCUCAAACUCC
.....(((((...((.((((((((((......))).))))))).))))))).............................................. (-11.80 = -12.80 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:12 2006