Locus 25

Sequence ID 2L_DroMel_CAF1
Location 89,641 – 89,736
Length 95
Max. P 0.588375
window37

overview

Window 7

Location 89,641 – 89,736
Length 95
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 73.88
Mean single sequence MFE -22.18
Consensus MFE -14.32
Energy contribution -16.18
Covariance contribution 1.86
Combinations/Pair 1.05
Mean z-score -1.14
Structure conservation index 0.65
SVM decision value 0.11
SVM RNA-class probability 0.588375
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 89641 95 - 22407834
CAC------------UACUAAACGUAACAAGAAGGAACGUGACGUCACAUGGAGGGACAUGUGCUUAUUACGGCAACGUUAUGUUUACUAUAUGAAAGGA---AUUUGAA
...------------...((((((((((..........((((...((((((......))))))....))))(....))))))))))).............---....... ( -21.00)
>DroGri_CAF1 72308 86 - 1
GUU------------UCACAUAACACAUAUUACUCCCAGUGACGUCACAUGCGUAUGCAUGUGAUUAUUACGAGAACGA-A-----------UGAAAGUAUGUGCAUAUU
...------------.((((((...(((....(((...((((.(((((((((....)))))))))..))))))).....-)-----------))....))))))...... ( -20.70)
>DroSec_CAF1 61883 95 - 1
CAC------------UACUAAACGUAACAAGAAGGAACGUGACGUCUCAUGGAGGGACAUGUGCUUAUUACGGCAACGUUAUGUUUACUAUAUGGAAGGA---AUCUGUA
...------------...((((((((((....(((.(((((.(.((.....)).)..))))).))).....(....)))))))))))...((((((....---.)))))) ( -20.50)
>DroSim_CAF1 64572 95 - 1
UAC------------UACUAAACGUAACAAGAAGGAACGUGACGUCUCAUGGAGGGACAUGUGCUUAUUACGGCAACGUUAUGUUUACUAUAUGGAAGGA---AUCUGUA
...------------...((((((((((....(((.(((((.(.((.....)).)..))))).))).....(....)))))))))))...((((((....---.)))))) ( -20.50)
>DroEre_CAF1 69150 107 - 1
CACUGUUCCCGUUAAUACUAAACGUAACAAGAAUAAACGUGACGUCACAUGGAGAGACAUGUGCUUAUUACGGCAACGUUAUGUUUACUAUAUGGAAGGA---AUCUGUA
.((.(((((..((((((.((((((((((..........((((...((((((......))))))....))))(....))))))))))).))).)))..)))---))..)). ( -28.10)
>DroYak_CAF1 62225 106 - 1
CACUGCACUCGUUAAUACUAAACGUAACAAGAAUAAACGUGACGUCACAUGGAGAGACAUGUGCUUAUUACGGCAACGUUAUGU-UACUAUGUGGAAGGA---AUCUGUA
..(..((..((((.......))))...........((((((((((.(((((......)))))(((......))).)))))))))-)....))..).....---....... ( -22.30)
>consensus
CAC____________UACUAAACGUAACAAGAAGGAACGUGACGUCACAUGGAGAGACAUGUGCUUAUUACGGCAACGUUAUGUUUACUAUAUGGAAGGA___AUCUGUA
..................((((((((((..........((((...((((((......))))))....))))(....)))))))))))....................... (-14.32 = -16.18 +   1.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:31 2006