Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,894,101 – 6,894,208 |
Length | 107 |
Max. P | 0.510356 |
Location | 6,894,101 – 6,894,208 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 92.99 |
Mean single sequence MFE | -31.64 |
Consensus MFE | -25.98 |
Energy contribution | -26.18 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.08 |
Mean z-score | -1.30 |
Structure conservation index | 0.82 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.510356 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6894101 107 - 22407834 GUAUUCAAAUUAAGCGACUUUACUGCGGUUUGCAGCAGCAAGAACUCCUUCCUCCAGGACAUUCGUAAUGGGUAACUGGCCCGGAGAAGUGGCAAUCCACCCGCAAA .......................((((((((((....)))))..((((.(((....)))..........((((.....))))))))..((((....))))))))).. ( -28.50) >DroSec_CAF1 92081 107 - 1 GAAUUCAAAUUAAGCGACUUUACUGCGGUUUGCAGCAGCAAGGAUUCCUUCCUCCAGGACAUUCGUAAUGGGUAACUGGCCCGGAGAAGUGGCAAUCCACCCGCAAA .......................(((((.((((....))))(((((((...((((...((....))...((((.....))))))))....)).)))))..))))).. ( -29.90) >DroSim_CAF1 86251 107 - 1 GAAUUCAAAUUAAGCGACUUUACUGCGGUUUGCAGCAGCAAGCACUCCUUCCUCCAGGACAUUCGUAAUGGGUAACUGGCCCGGAGAAGUGGCAAUCCACCCGCAAA .......................((((((((((....)))))).((((.(((....)))..........((((.....))))))))..((((....)))).)))).. ( -29.60) >DroEre_CAF1 92673 106 - 1 AAAUUCAAAUUA-ACGAGUUUACUGCGGCUUGGAGCAGCAAGGACUCCUUCCUGCAGGAGAUUCGUAAUGGGUAACUGGCCCGGAGAAGUGGCAAUCCACCCGCAAA ...(((......-((((((((.((((((...(((((......).))))...)))))).))))))))..(((((.....)))))..)))((((........))))... ( -35.00) >DroYak_CAF1 90384 107 - 1 AAAUUCAAAUUAAACGAGUUUACUGCGGCUUGGGGCAGCAAGGACCCCAUCCUGCAGGACAUUUGUAAUGGGUAACUGGCCCGGAGAAGUGGCAAUCCACCCGCAAA ...(((.......((((((...((((((..((((((......).)))))..))))))...))))))..(((((.....)))))..)))((((........))))... ( -35.20) >consensus GAAUUCAAAUUAAGCGACUUUACUGCGGUUUGCAGCAGCAAGGACUCCUUCCUCCAGGACAUUCGUAAUGGGUAACUGGCCCGGAGAAGUGGCAAUCCACCCGCAAA .......................((((((((((....)))))..((((.(((....)))..........((((.....))))))))..((((....))))))))).. (-25.98 = -26.18 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:20 2006