Locus 2498

Sequence ID 2L_DroMel_CAF1
Location 6,887,345 – 6,887,455
Length 110
Max. P 0.763431
window3999

overview

Window 9

Location 6,887,345 – 6,887,455
Length 110
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 93.64
Mean single sequence MFE -22.38
Consensus MFE -20.50
Energy contribution -20.30
Covariance contribution -0.20
Combinations/Pair 1.07
Mean z-score -1.23
Structure conservation index 0.92
SVM decision value 0.51
SVM RNA-class probability 0.763431
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6887345 110 + 22407834
UUUGCACAGCAUAAGUGAGACUUUCAUUAUUUAUUACCAGGUUAAAUCAUGUAAAAACCCCAUGAUUGAAUUGGCUAGCCGAUUUGCAGCAACCAUAAAUGUGAAUUUCA
....(((.......))).((..(((((.((((((.....((((.(((((((.........)))))))(((((((....))))))).....)))))))))))))))..)). ( -22.50)
>DroSec_CAF1 85423 110 + 1
UUUGCACAGCAUAAGUGAGACUUUCAUUAUUUAUUACCAGGUUAAAUCAUGUAAAAACCCCAUGAUUGAAUUGGCCAGCCGAUUUGCAGCAACCAUAAAUGUGAAUUUCA
....(((.......))).((..(((((.((((((.....((((.(((((((.........)))))))(((((((....))))))).....)))))))))))))))..)). ( -22.50)
>DroSim_CAF1 79431 110 + 1
UUUGCACAGCAUAAGUGAGACUUUCAUUAUUUAUUACCAGGUUAAAUCAUGUAAAAACCCCAUGAUUGAAUUGGCUAGCCGAUUUGCUGCAACCAUAAAUGUGAAUUUCA
....(((.......))).((..(((((.((((((.....((((.(((((((.........)))))))(((((((....))))))).....)))))))))))))))..)). ( -22.50)
>DroEre_CAF1 86026 110 + 1
UUUGCACAGCAUAAGUGAGACUCCCAUUAUUUAUUACCAGGUUAAAUCAUGUAAAAACCCCAUGAUUGAAUUGGCUAGCCGGUUUGCAACAACCAUGAAUGUGAACUCCA
....((((..((((((((........)))))))).....((((.(((((((.........)))))))(((((((....))))))).....)))).....))))....... ( -21.70)
>DroYak_CAF1 83782 110 + 1
UUUUCACAGCAUAAGUGAGAAGCCCAUUAUUUAUUACCAGGUUAAAUCAUGUAAAAUCCCCAUGAUUGAAUUGGCUAGCUGGUUUGCAACAAGCAUAAAUGUGAAUUCCA
..((((((((((((((((........))))))))..((((....(((((((.........)))))))...))))...))).(((((...)))))......)))))..... ( -22.70)
>consensus
UUUGCACAGCAUAAGUGAGACUUUCAUUAUUUAUUACCAGGUUAAAUCAUGUAAAAACCCCAUGAUUGAAUUGGCUAGCCGAUUUGCAGCAACCAUAAAUGUGAAUUUCA
....((((..((((((((........)))))))).....((((.(((((((.........)))))))(((((((....))))))).....)))).....))))....... (-20.50 = -20.30 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:19 2006