Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,876,130 – 6,876,223 |
Length | 93 |
Max. P | 0.545262 |
Location | 6,876,130 – 6,876,223 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 79.16 |
Mean single sequence MFE | -23.30 |
Consensus MFE | -16.18 |
Energy contribution | -16.93 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.30 |
Mean z-score | -1.12 |
Structure conservation index | 0.69 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.545262 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6876130 93 - 22407834 AAUUCGAUGAAAAAGGUUAUGAAAGGUCUGAGUUUUUGCCCGGGUUUUGACAUUUCGGCCAUAUUGAAAU--GGCGGUUGACUUU---UCGGAGUGGU .((((.((((......))))((((((((...(((...((....))...)))....(.(((((......))--))).)..))))))---)).))))... ( -21.00) >DroSec_CAF1 80233 95 - 1 AAUUCGAUGAAAAAGGUUAUGAAAGGUCUGAGUUUUUGCCCGGGUUUUGACAUUUCAGCCAUAUUGAAAUGUGGCGGUUGACUUU---UCGGAGUGGU ..(((((.....((((((((((((.(((.(((..(......)..))).))).)))))(((((((....)))))))...)))))))---)))))..... ( -22.90) >DroSim_CAF1 74319 95 - 1 AAUUCGAUGAAAAAGGUUAUGAAAGGUCUGAGUUUUUGCCCGGGUUUUGACAUUUCAGCCAUAUUGAAAUGUGGCGGUUGACUUU---UCGGAGUGGU ..(((((.....((((((((((((.(((.(((..(......)..))).))).)))))(((((((....)))))))...)))))))---)))))..... ( -22.90) >DroEre_CAF1 80776 95 - 1 AAUUCGAUGAAAAAGGUUAUGAAAGGUCAGAGUUUUUACCCGGGUUUUGACAUUUCAGCCAUAUUAAAAUGUGGCGGUUGACUUU---UCGGAGUGGU ..(((((.....((((((((((((.(((((((..(......)..))))))).)))))(((((((....)))))))...)))))))---)))))..... ( -26.70) >DroYak_CAF1 78495 96 - 1 AAUUCGAUGAAAAAGGCUAUGAAAGGUCAGAGUUUUAACCCGGGUCUUGACAUUUCAGCCAUAUUGAAAUGUGGCGGUUGACUUU--AACGAAGUGGU ..((((.((((...((((.(((((.(((((..(((......)))..))))).)))))(((((((....)))))))))))...)))--).))))..... ( -24.60) >DroAna_CAF1 75878 85 - 1 AUUUAUGUAAUAUAGGUCA--AAGGGACUGACUUUAUGGCCGGAAUG---------AGCCA--AUGACUCCUGGCAGUUGAAACCGAAAGUGAGGAGC ..............(((((--((((......)))).)))))((....---------..)).--....(((((.((..(((....)))..)).))))). ( -21.70) >consensus AAUUCGAUGAAAAAGGUUAUGAAAGGUCUGAGUUUUUGCCCGGGUUUUGACAUUUCAGCCAUAUUGAAAUGUGGCGGUUGACUUU___UCGGAGUGGU ..(((((.....(((((((...(((..(((.((....)).)))..))).........(((((((....)))))))...)))))))...)))))..... (-16.18 = -16.93 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:16 2006