Locus 2495

Sequence ID 2L_DroMel_CAF1
Location 6,868,258 – 6,868,353
Length 95
Max. P 0.576222
window3996

overview

Window 6

Location 6,868,258 – 6,868,353
Length 95
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 81.90
Mean single sequence MFE -19.90
Consensus MFE -11.02
Energy contribution -11.68
Covariance contribution 0.67
Combinations/Pair 1.22
Mean z-score -2.26
Structure conservation index 0.55
SVM decision value 0.09
SVM RNA-class probability 0.576222
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6868258 95 - 22407834
UC-UACAUGCUGCGAUCAAUCAUCAUCGCAAAAGUCUUUUAUAUUUGCAAUAAAUUAAUGCAAAUAUACAGCCGUAGAUAACUUUGUGAAAGCUC--C
((-(((..((((((((........)))))..........((((((((((.........)))))))))).))).))))).......((....))..--. ( -22.00)
>DroVir_CAF1 104910 91 - 1
UCCGAUGUGCUGCCAUCAAUC---AUGGC--AGGUCUUUUAUUUGAGCUAUAAACAAUUGCCAAUAUAUGGCAUCUGAUAAAAUUAUGAAAGGCC--C
..........((((((.....---)))))--)((((((((((......(((...((..(((((.....)))))..))))).....))))))))))--. ( -23.60)
>DroSec_CAF1 72480 92 - 1
UC-AACAUACUGCGAUCAAUC---AUCGCAAAAGUCUUUUAUAUUUGCAAUAAAUUAAUGCAAAUAUACGGCCGUAGAUAACUUUGUGAAAGGUC--C
..-.......((((((.....---)))))).........((((((((((.........)))))))))).((((.((.(......).))...))))--. ( -18.90)
>DroSim_CAF1 65693 92 - 1
UC-AACAUGCUGCGAUCAAUC---AUCGCAAAAGUCUUUUAUAUUUGCAAUAAAUUAAUGCAAAUAUACGGCCGUAGAUAACUUUCUGAAAGCUC--C
..-.......((((((.....---)))))).........((((((((((.........)))))))))).(((..((((......))))...))).--. ( -19.30)
>DroEre_CAF1 72232 92 - 1
UG-UACAUGCUGCGAUCAAUC---AUCGCAAAAGUCUUUUAUAUUUGCAAUAAAUUAAUGCAAAUAUACAGCCUUAGAUAACUUUGUGAAAGCUC--C
..-.....((((((((.....---)))))..(((.((..((((((((((.........)))))))))).)).)))...............)))..--. ( -17.70)
>DroAna_CAF1 67151 92 - 1
UC-UAAAUUCUGCGAUCAAUC---AUUG--AAAGUCUUUUAUAUUUGUUAUAAAUUAAUGCAAAUAUACGACUUGAGAUAGCCUCGUGAAAGCUUGGC
..-..................---(((.--.(((((...(((((((((...........))))))))).)))))..))).(((..((....))..))) ( -17.90)
>consensus
UC_UACAUGCUGCGAUCAAUC___AUCGCAAAAGUCUUUUAUAUUUGCAAUAAAUUAAUGCAAAUAUACGGCCGUAGAUAACUUUGUGAAAGCUC__C
..........((((((........))))))...(((...(((((((((...........))))))))).))).......................... (-11.02 = -11.68 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:15 2006