Locus 2489

Sequence ID 2L_DroMel_CAF1
Location 6,850,109 – 6,850,214
Length 105
Max. P 0.540925
window3984

overview

Window 4

Location 6,850,109 – 6,850,214
Length 105
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 84.31
Mean single sequence MFE -22.17
Consensus MFE -15.36
Energy contribution -17.52
Covariance contribution 2.16
Combinations/Pair 1.12
Mean z-score -1.65
Structure conservation index 0.69
SVM decision value 0.01
SVM RNA-class probability 0.540925
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6850109 105 - 22407834
UUGUCCUGCUUCGAGAAUGCUAACUAACCUUCACCCCAAAA-ACUACUGUCAACAGAACAC--AAUUCCUUAUGGCUGAGGGAAAAUCCUUGAGGCAAGGCAAAUCCA
(((((.(((((((((..........................-....(((....))).....--..(((((((....))))))).....))))))))).)))))..... ( -26.30)
>DroSec_CAF1 54599 103 - 1
UUGUCCUGCUUCGAGAAUGCUAACUAACCUUCACCCCCA-A-ACUACUGUCAACAGAACAC--UAU-CCUUAUGGCUGAAGGGAAAUCCUUGAGGCAAGGCAAAUCCA
(((((.(((((((((............((((((......-.-....(((....))).....--...-((....)).))))))(....)))))))))).)))))..... ( -26.10)
>DroSim_CAF1 46288 103 - 1
UUGUCCUGCUUCGAGAAUGCUAACUAACCUUCACCCCCA-A-ACUACUGUCAACAGAACAC--AAU-CCUUAUGGCUGAGGGGAAAUCCUUGAGGCAAGGCAAAUCCA
(((((.(((((((((...(....).........((((((-.-....(((....))).....--...-((....)).)).)))).....))))))))).)))))..... ( -26.30)
>DroEre_CAF1 54217 98 - 1
UUGCCUUGCUUCGAGAAUGCUAACUAACCUUCAACCCCC-A-ACUAUUGUCAACAGUACAC--AAU-CCUUAUGGCCGAGGGAAAAUCCUUGAGG-----CAAAUCCA
.....((((((((((...(....)...(((((.......-.-..(((((....)))))...--...-((....))..)))))......)))))))-----)))..... ( -19.60)
>DroYak_CAF1 52400 91 - 1
UUGCCUUGCUUCGAGAAUGCUAACUAACCUUUACCCCCA-AAAGUUUUGUCAACAGUACACCAAAU-CCUUAUGGCCGCAGGGAAAUCCUUGA---------------
...((((((...((.((.(((..................-..))).)).)).........(((...-.....)))..))))))..........--------------- ( -12.55)
>consensus
UUGUCCUGCUUCGAGAAUGCUAACUAACCUUCACCCCCA_A_ACUACUGUCAACAGAACAC__AAU_CCUUAUGGCUGAGGGGAAAUCCUUGAGGCAAGGCAAAUCCA
(((((.(((((((((.((.........(((((..............(((....)))...........((....))..)))))...)).))))))))).)))))..... (-15.36 = -17.52 +   2.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:03 2006