Locus 2488

Sequence ID 2L_DroMel_CAF1
Location 6,848,558 – 6,848,651
Length 93
Max. P 0.686316
window3983

overview

Window 3

Location 6,848,558 – 6,848,651
Length 93
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 78.34
Mean single sequence MFE -17.97
Consensus MFE -11.42
Energy contribution -11.58
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.48
Structure conservation index 0.64
SVM decision value 0.32
SVM RNA-class probability 0.686316
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6848558 93 + 22407834
CAUGUGCAAUGCACGUGUCCUAUUCAAAAAAAAAAAAGAAACUGGGAUGGAUGGUU----UUGUUUUUUAAAAUACAACAAAAUCGCAAUUGGCGAA
(((((((...)))))))((((((((............)))..))))).....((((----(((((...........)))))))))((.....))... ( -18.10)
>DroSec_CAF1 52906 90 + 1
CAUGUGCAAUGCACGUGGCGCAUUGAAAAAAAA--AAGUAUCUGGGAUGGAUGGUU----UUGUUU-UUAAAAUACAACAAAAUCGCAAUUGGCGAA
(((((((...))))))).....(((((((..((--((.(((((.....))))).))----)).)))-))))............((((.....)))). ( -20.90)
>DroSim_CAF1 44584 86 + 1
CAUGUGCAAUGCACGUGGCGCAUUGAAAAAAAA--GA-----UGGGAUGGAUGGAU----UUGUUUUUUAAAAUACAACAAAAUCGCAAUUGGCGAA
(((((((...))))))).(((.((....))...--..-----((.(((.(.((.((----((........)))).)).)...))).))....))).. ( -16.50)
>DroEre_CAF1 52500 84 + 1
CAUGUGCAAUGCACGUGUCGUAUUGAAAA--AA--AC-----UGGAAUGGAUGGUU----UUAUUUUUUAAAAUACCAUAAAAUCGCAAUCGGCGAA
(((((((...)))))))..(((((..(((--((--(.-----((((((.....)))----)))))))))..))))).......((((.....)))). ( -18.60)
>DroYak_CAF1 50765 85 + 1
CAUGUGCACUGCACGUGUC-CAUUGAAAAAAAA--AA-----UGGAAUGGAUGGUU----UUAUUUUUUAAAAUACAAAAAAAUCGCAAUUGGCGAA
(((((((...)))))))((-((((.........--))-----)))).((....(((----(((.....)))))).))......((((.....)))). ( -19.20)
>DroPer_CAF1 60167 88 + 1
CAUGUGCAUCGCACGUGUCGCAGUCAAAAGGAAUAAA-UUCGCACGAUUGAUGGUUCACUUUUUUUUUUUAAAU--------UUCGCAAAUUGCAAA
(((((((...)))))))..(((((.....(((((...-.((....)).(((....)))..............))--------)))....)))))... ( -14.50)
>consensus
CAUGUGCAAUGCACGUGUCGCAUUGAAAAAAAA__AA_____UGGGAUGGAUGGUU____UUGUUUUUUAAAAUACAACAAAAUCGCAAUUGGCGAA
(((((((...)))))))..................................................................((((.....)))). (-11.42 = -11.58 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:02 2006