| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,841,145 – 6,841,249 |
| Length | 104 |
| Max. P | 0.726860 |
| Location | 6,841,145 – 6,841,249 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 77.53 |
| Mean single sequence MFE | -30.71 |
| Consensus MFE | -15.57 |
| Energy contribution | -15.43 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.726860 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6841145 104 - 22407834 CACUCCAGUUGUGCGUGUUGUUGCUCUUUUGCCCGGCCUGCACUUGAAAUUGUCAGCAGGUGCUCGUCGCAGGCGGGCGUUGUAACAACAUUUGC---AGUUAUAGU .(((..(..((((.((((((((((.....((((((.(((((((..(...(((....)))...)..)).)))))))))))..)))))))))).)))---)..)..))) ( -39.70) >DroVir_CAF1 62271 94 - 1 CUCCCCAGUUGUGCGUGUUGUUCUUUCUUU----GGCAUGCACUUGAAAUUGUCAGCAGGUGCG--GCG----CAUGCACUGUAACAACAUUUAC---AGAUACAAC .......(((((((((((....(.......----)((.((((((((..........))))))))--)))----))))).((((((......))))---))..))))) ( -25.80) >DroGri_CAF1 54935 92 - 1 UUCCCCAGUUGUGCGUGUUGUUCUUUCUUU----CGCAUGCACUUGAAAUUGUCAGCAGGUGCA--GCG----UAUGCAUUGUAACAACAUUUAC---AGAUACA-- ........(((((.(((((((((.......----(((.((((((((..........))))))))--)))----........).)))))))).)))---)).....-- ( -26.56) >DroEre_CAF1 44452 100 - 1 CACUCCAGUUGUGCGUGUUGUUGCUCUUUUGCCC-GCCUGCACUUGAAAUUGUCAGCAGGUGCUCGUCGC---CGGGCGUUAAAACAACAUUUGC---AGUUAUAGU .(((..(..((((.((((((((.......(((((-((((((...(((.....)))))))))((.....))---.)))))....)))))))).)))---)..)..))) ( -30.60) >DroWil_CAF1 20198 95 - 1 CACUCCAGUUGUUCGUGUUGUUCUUUACUUAC---AGUUGCACUUGAAAUUGUCAGCAGGUGCUCC--G----UAUGCAUUGUAACAAUAUUUAC---AGUUAUAGU .(((..(..(((..(((((((((......(((---.(..(((((((..........)))))))..)--)----))......).))))))))..))---)..)..))) ( -19.90) >DroAna_CAF1 38743 104 - 1 CACUCCAGUUGUGCGUGUUGUUGUUCUUUUGCUCGGCCUGCACUUGAAAUUGUCAGCAGGUGCUCGGGCC---GGGGCGUUGUAACAACAUUUGCAACAGCGACACU (((.......))).(((((((((((......(((((((((((((((..........)))))))..)))))---)))(((.(((....)))..)))))))))))))). ( -41.70) >consensus CACUCCAGUUGUGCGUGUUGUUCUUCUUUUGC__GGCCUGCACUUGAAAUUGUCAGCAGGUGCUCGGCG____CAGGCAUUGUAACAACAUUUAC___AGUUACAGU ..........(((.((((((((.............((((((...(((.....)))))))))(((...........))).....)))))))).)))............ (-15.57 = -15.43 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:02 2006