Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,836,465 – 6,836,566 |
Length | 101 |
Max. P | 0.944079 |
Location | 6,836,465 – 6,836,566 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 76.68 |
Mean single sequence MFE | -23.10 |
Consensus MFE | -14.65 |
Energy contribution | -15.68 |
Covariance contribution | 1.03 |
Combinations/Pair | 1.18 |
Mean z-score | -1.96 |
Structure conservation index | 0.63 |
SVM decision value | 1.34 |
SVM RNA-class probability | 0.944079 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6836465 101 + 22407834 AUGUAGCCCAACAAGUCUGUGCCACUAUCUCCAUACAACAAGAGGGCUAUAGAUAAGGGGCAACUAUACGGAAAUCUACUCGUAUA--UGCGAUUCUAGCAUU ..((.((((.....(((((((((....(((..........))).))).))))))...)))).))(((((((........)))))))--(((.......))).. ( -26.20) >DroSec_CAF1 40647 86 + 1 AUGUAGCCCAACAAGUCUGUGCCACUAUCUCCAUACAACA-GAGGGCUAUAGAUAAGGGGCAACUAUACGGAAAUCUACUCGUAUC--U-------------- ..((.((((.....(((((((((....(((.........)-)).))).))))))...)))).)).((((((........)))))).--.-------------- ( -22.30) >DroSim_CAF1 32602 86 + 1 AUGUAGCCCAACAAGUCUGUGCCACUAUCUCCAUACAACA-GAGGGCUAUAGAUAAGGGGCAACUAUACGGAAAACUACUCGUAUC--C-------------- ..((.((((.....(((((((((....(((.........)-)).))).))))))...)))).)).((((((........)))))).--.-------------- ( -22.30) >DroEre_CAF1 39816 93 + 1 AUGUAGCCCAACAAGUCUGUGCCACUAUCUCCAUACAACA-GAGGGCUAUAGAUAAGGGGCAACUAUACGGA---------AUAUGUAUGCGUGACUAGCAUG ((((.((((.....(((((((((....(((.........)-)).))).))))))...)))).((((((((..---------...)))))).)).....)))). ( -23.80) >DroYak_CAF1 37237 100 + 1 AUGUAGCCCAACAAGUCUGUGCCACUAUCUCCGUACAACA-GAGGGCUAUAGAUAAGGGGCAACUAUACGGAUA--UACUUGUAUAUAUGCGUUGCUACCAUU .((((((((......(((((...((.......))...)))-)))))))))).....(((((((((((((((...--...))))))).....)))))).))... ( -27.70) >DroAna_CAF1 34339 97 + 1 AUGUAACACAACAAGUCUAUGCCACUAUCUCCAUUCAGCA-GAGUGCCAUAGAUAAGAGAAAA-AACACAUAUA--UGUAUGUACAUAUUCCC--UUACCGUU .........(((..(((((((.((((..((......))..-.)))).)))))))(((.(((..-...(((((..--..))))).....))).)--))...))) ( -16.30) >consensus AUGUAGCCCAACAAGUCUGUGCCACUAUCUCCAUACAACA_GAGGGCUAUAGAUAAGGGGCAACUAUACGGAAA__UACUCGUAUA__UGCG___CUA_CAUU .....((((.....(((((((((.....(((..........)))))).))))))...))))....((((((........)))))).................. (-14.65 = -15.68 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:01 2006