Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,831,744 – 6,831,846 |
Length | 102 |
Max. P | 0.759872 |
Location | 6,831,744 – 6,831,846 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 75.94 |
Mean single sequence MFE | -41.47 |
Consensus MFE | -16.73 |
Energy contribution | -16.84 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.27 |
Mean z-score | -2.24 |
Structure conservation index | 0.40 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.759872 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6831744 102 + 22407834 CGG-ACGCCACGCAGUCCGCCACUGGGUCAUCUGACA-----UCCAG--C-GGUCUGGCCAUGCCAUUCAAUCCGCUGGAGGCGAUGCGCCAGGGUUAUCCGCCCAACUAC (((-(.(((.((((...((((.....(((....))).-----(((((--(-((..((((...))))......)))))))))))).))))....)))..))))......... ( -41.00) >DroPse_CAF1 45305 108 + 1 AGGCGCGCC-CGCAGUCCCCCACUCGGCCAUCUGGCCAGCUCUGCCU--CGGCUCUGGCCAUGCCCUUCAAUCCUUUGGAGGCCAUGCGGCAGGGCUAUCCUCCGAACUAC .(((((...-.)).)))......((((((....))))(((((((((.--((((....)))(((.(((((((....))))))).)))).))))))))).......))..... ( -44.30) >DroYak_CAF1 32263 102 + 1 CGA-ACGCCACGCAGCCCGCCACUCGGUCAUCUGACC-----UCCAG--C-GGCCUGGCCAUGCCAUUCAAUCCGCUGGAGGCGAUGCGCCAGGGCUAUCCGCCCAACUAU ...-......((((...((((....((((....))))-----(((((--(-((..((((...))))......)))))))))))).))))...((((.....))))...... ( -43.70) >DroMoj_CAF1 51097 107 + 1 -GGCGCGC-UCGUAGUCCUCCGCUGAGCCUGAUCGGCGCA--UCCAACGCGGCGCUGGCUCUGCCCACCAAUCCACUGGAGGCCAUGCGCCAGAACUACCCGCCCAACUAC -((.(((.-..(((((.((.((((((......))))))..--........(((((((((.((.((............)))))))).))))))).))))).)))))...... ( -39.00) >DroAna_CAF1 29595 102 + 1 CGG-ACGCCACGUAGUCCUCCGUUGAGCCAUCUCACC-----GCCAG--C-GGCCUGCCCAUGCCCUUCAAUCCCCUGGAGGCCAUGCGCCAGGGCUAUCCGCCCAACUAU .((-((........)))).((((((.((.........-----)))))--)-))...((.((((.((((((......)))))).)))).))..((((.....))))...... ( -36.50) >DroPer_CAF1 37163 108 + 1 AGGCGCGCC-CGCAGUCCCCCACUCGGCCAUCUGGCCAGCUCUGCCU--CGGCUCUGGCCAUGCCCUUCAAUCCUUUGGAGGCCAUGCGGCAGGGCUAUCCUCCGAACUAC .(((((...-.)).)))......((((((....))))(((((((((.--((((....)))(((.(((((((....))))))).)))).))))))))).......))..... ( -44.30) >consensus CGG_ACGCCACGCAGUCCCCCACUCGGCCAUCUGACC_____UCCAG__C_GCUCUGGCCAUGCCCUUCAAUCCGCUGGAGGCCAUGCGCCAGGGCUAUCCGCCCAACUAC (((...(((.((((...........(((((.........................)))))..(((.((((......)))))))..))))....)))...)))......... (-16.73 = -16.84 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:00 2006