Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,830,205 – 6,830,306 |
Length | 101 |
Max. P | 0.810727 |
Location | 6,830,205 – 6,830,306 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 86.81 |
Mean single sequence MFE | -24.43 |
Consensus MFE | -22.75 |
Energy contribution | -22.75 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.47 |
Structure conservation index | 0.93 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.810727 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6830205 101 + 22407834 -------GGCC----------CGCUGUGUGUUUUCUGUUUUGUCAUGCUCCAUUUAGCCGAGUGUGGACCGAACAGAUGUUCUAUUUAAACGCACAUUAUUAUUAUUUCAUUUCGACA -------....----------...((((((((((((((((.(((((((((.........)))))).))).)))))))..........)))))))))...................... ( -24.00) >DroVir_CAF1 48661 99 + 1 -------------------CUGUUUGUGUGUUUUCUGUUUUGUCAUGCUCCAUUUACCCGAGUGCGGACCGAACAGAUGUUCUAUUUAAACGCACAUUAUUAUUAUUCCAUUUCGACA -------------------.....((((((((((((((((.(((..((((.........))))...))).)))))))..........)))))))))...................... ( -22.80) >DroPse_CAF1 43850 115 + 1 GUGUGCCGCCCU---GCUUUUCUCUGUGUGUUUUCUGUUUUGUCAUGCUCCAUUUAGCCGAGUGUGGACCGAACAGAUGUUCUAUUUAAACGCACAUUAUUAUUAUUUCAUUUCGACA ............---.........((((((((((((((((.(((((((((.........)))))).))).)))))))..........)))))))))...................... ( -24.00) >DroGri_CAF1 41113 99 + 1 -------------------CUGUUUGUGUGUUUUCUGUUUUGUCAUGCUCCAUUUAGCCGAGUGUGGACCGAACAGAUGUUCUAUUUAAACGCACAUUAUUAUUAUUCCAUUUCGACA -------------------.....((((((((((((((((.(((((((((.........)))))).))).)))))))..........)))))))))...................... ( -24.10) >DroMoj_CAF1 49415 110 + 1 -------GGCU-GUGGGCUCUGUGUGUGUGUUUUCUGUUUUGUCAUGCUCCAUUUAGCCGAGUGCGGACCGAACAGAUGUUCUAUUUAAACGCACAUUAUUAUUAUUCCAUUUCGACA -------.(..-(((((......(((((((((((((((((.(((..((((.........))))...))).)))))))..........)))))))))).........)))))..).... ( -27.66) >DroPer_CAF1 35702 115 + 1 GUGUGCCGCCCU---GCUUUUCUCUGUGUGUUUUCUGUUUUGUCAUGCUCCAUUUAGCCGAGUGUGGACCGAACAGAUGUUCUAUUUAAACGCACAUUAUUAUUAUUUCAUUUCGACA ............---.........((((((((((((((((.(((((((((.........)))))).))).)))))))..........)))))))))...................... ( -24.00) >consensus _______G_CC________CUCUCUGUGUGUUUUCUGUUUUGUCAUGCUCCAUUUAGCCGAGUGUGGACCGAACAGAUGUUCUAUUUAAACGCACAUUAUUAUUAUUCCAUUUCGACA ........................((((((((((((((((.(((..((((.........))))...))).)))))))..........)))))))))...................... (-22.75 = -22.75 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:59 2006