Locus 2482

Sequence ID 2L_DroMel_CAF1
Location 6,824,483 – 6,824,573
Length 90
Max. P 0.509106
window3973

overview

Window 3

Location 6,824,483 – 6,824,573
Length 90
Sequences 3
Columns 109
Reading direction reverse
Mean pairwise identity 79.20
Mean single sequence MFE -24.67
Consensus MFE -15.06
Energy contribution -15.73
Covariance contribution 0.67
Combinations/Pair 1.13
Mean z-score -1.72
Structure conservation index 0.61
SVM decision value -0.05
SVM RNA-class probability 0.509106
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6824483 90 - 22407834
GACAGCUUGGCUGGAAAAGUCCGAAUCUACUUAAAGUUUGGAAAAAGGAGACACAGCUGUCUGCAU-------------------CUAGCUAGUGAAAGAUUAAAACAA
....(((.(((((((....((((((.((......))))))))....(.(((((....))))).).)-------------------)))))))))............... ( -23.10)
>DroSec_CAF1 28633 109 - 1
GUCAGCUUGGCUGGAAAAGUCCGAAUCCACUUAAAGUUUGGAAACAGAAAACACAGCUAUUUUCAUGUGGGGUAUCUUUAAGGUUUUAGCUAGUGAACAAGCAAAAUAA
....(((((.(((......(((((((.........)))))))..)))....((((((((...((...(((((...))))).))...))))).)))..)))))....... ( -23.50)
>DroSim_CAF1 20472 109 - 1
GUCAGCUUGGCUGGAAAAGUCCGACUCCACUUAAAGUUUGGAAACAGAAAACACAGCUAUUUUCAUGUGGGGUAUCUUUAAGGUUUUAGCUAGUGAACAAGCAAAAUAA
....((((((((((..(((.((.(((((((........((....))(((((........)))))..)))))))........)).)))..)))))...)))))....... ( -27.40)
>consensus
GUCAGCUUGGCUGGAAAAGUCCGAAUCCACUUAAAGUUUGGAAACAGAAAACACAGCUAUUUUCAUGUGGGGUAUCUUUAAGGUUUUAGCUAGUGAACAAGCAAAAUAA
....(((((.(((......(((((((.........)))))))..)))....((((((((...........................))))).)))..)))))....... (-15.06 = -15.73 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:53 2006