Locus 2481

Sequence ID 2L_DroMel_CAF1
Location 6,815,680 – 6,815,777
Length 97
Max. P 0.518037
window3972

overview

Window 2

Location 6,815,680 – 6,815,777
Length 97
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.83
Mean single sequence MFE -16.38
Consensus MFE -11.35
Energy contribution -11.13
Covariance contribution -0.22
Combinations/Pair 1.07
Mean z-score -1.34
Structure conservation index 0.69
SVM decision value -0.03
SVM RNA-class probability 0.518037
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6815680 97 - 22407834
-----AGUGCAAAAACGUUUCUCACGCUUCGGAGUUUGACAUUUUCGAACUUUUGCAUGAUUUUAAAAACUUAAUUGUUCUUAACUGUUUUAUUUGCU------UUUU------------
-----...((((((((.....(((.((...(((((((((.....))))))))).)).)))..((((.(((......))).))))..)))...))))).------....------------ ( -16.80)
>DroVir_CAF1 28128 103 - 1
-----ACUGCAAAAAUAUUUCUCACGCUUCGAAGUUUGACAUUUUCGAACUUUUGCAUGAUUUCAAAUUCUUAAUUGUUCUUAACUGUUUUAUUUUUUCAAGCAUUUU------------
-----..((((((((((....(((.((...(((((((((.....))))))))).)).)))....((((..((((......))))..)))))))))))....)))....------------ ( -14.20)
>DroPse_CAF1 25717 114 - 1
CAUUCACUGCAAAAAUGUUUCUCACGCUUCGGAGUUUGACAUUUUCGAACUUUUGCAUGAUUUCAAAAACUUAAUUGUUUUUAACUGUUUUAUUUGUC------UUUUUCUCUUAUUCGG
........(((((........(((.((...(((((((((.....))))))))).)).)))....((((((......))))))..........))))).------................ ( -16.10)
>DroGri_CAF1 21954 102 - 1
-----ACUGCAAAAAUAUUUCUCACGCUUCGGAGUUUGACAUUUUCGAACUUUUGCAUGAUUUCAAAUUUUUAAUUGUUUUUAACUGUUUUAUUUUUUCU-GCACUGU------------
-----..((((((((((....(((.((...(((((((((.....))))))))).)).)))....((((..((((......))))..))))))))))...)-)))....------------ ( -15.60)
>DroMoj_CAF1 26524 101 - 1
-----ACUGCAAAAAUAUUUCUCACGCUUCGAAGUUUGACAUUUUCGAACUUUUGCAUGAUUUCAAAU-AUUAAUUGUUCUUAACUGUUUUAUUUUUUCU-GCAGUAA------------
-----((((((((((((....(((.((...(((((((((.....))))))))).)).)))....((((-(((((......)))).)))))))))))...)-)))))..------------ ( -19.50)
>DroPer_CAF1 17462 114 - 1
CAUUCACUGCAAAAAUGUUUCUCACGCUUCGGAGUUUGACAUUUUCGAACUUUUGCAUGAUUUCAAAAACUUAAUUGUUUUUAACUGUUUUAUUUGUC------UUUUUAUCUUAUUCGG
........(((((........(((.((...(((((((((.....))))))))).)).)))....((((((......))))))..........))))).------................ ( -16.10)
>consensus
_____ACUGCAAAAAUAUUUCUCACGCUUCGGAGUUUGACAUUUUCGAACUUUUGCAUGAUUUCAAAAACUUAAUUGUUCUUAACUGUUUUAUUUGUU______UUUU____________
.....................(((.((...(((((((((.....))))))))).)).)))............................................................ (-11.35 = -11.13 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:52 2006