Locus 2480

Sequence ID 2L_DroMel_CAF1
Location 6,813,429 – 6,813,542
Length 113
Max. P 0.837408
window3971

overview

Window 1

Location 6,813,429 – 6,813,542
Length 113
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 83.68
Mean single sequence MFE -24.58
Consensus MFE -18.07
Energy contribution -18.40
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.83
Structure conservation index 0.73
SVM decision value 0.74
SVM RNA-class probability 0.837408
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6813429 113 + 22407834
CG-----ACUCAGCGCGAUCAAUUUAAAUUAAGCCGAAGAUUUGGUUUUAAUUAAAAAUCUUCAAAUACGCUUAAUGACAAUUAAUUGGUCAACAUCAG--GCCAGUCAUCGCCGUCGAA
((-----((.......((((((((...(((((((.((((((((............))))))))......))))))).......)))))))).......(--((........))))))).. ( -27.50)
>DroVir_CAF1 25193 101 + 1
--------CU---GGCGAUCAAUUUAAAUUAAGCCGAAGAUUUUGUUUUAAUUAAAAAUCUUCAAAUACGCUUAAUGACAAUUAAUUGGUCAACAUCAUCGGCUCUCGAUCG--------
--------.(---(..((((((((...(((((((.(((((((((..........)))))))))......))))))).......))))))))..))..((((.....))))..-------- ( -21.30)
>DroPse_CAF1 22083 98 + 1
CG-----ACUG-GGGCGAUCAAUUUAAAUUAAGCUGAAGAUUUUGCUUUAAUUAAAAAUCUUCAAAUACGCUUAAUGACAAUUAAUUGGUCAACAUCAG--C------AUCA--------
.(-----.(((-((..((((((((...(((((((((((((((((..........)))))))))).....))))))).......))))))))..).))))--)------....-------- ( -25.50)
>DroGri_CAF1 18902 104 + 1
UG-----GCU---GGCGAUCAAUUUAAAUUAAACAGAAGAUUUUGUUUUAAUUAAAAAUCUUCAAAUACGCUUAAUGACAAUUAAUUGGUCAACAUCAUCGGUACUCGAUCG--------
.(-----(.(---(..(((((((............(((((((((..........))))))))).........((((....)))))))))))..))))((((.....))))..-------- ( -16.90)
>DroMoj_CAF1 22802 109 + 1
UGAUGAUGAU---GGCGAUCAAUUUAAAUUAAGCCGAAGAUUUUGCUUUAAUUAAAAAUCUUCAAAUACGCUUAAUGACAAUUAAUUGGUCAACAUCAUCGGCUCUCGAUCG--------
...(((((((---(..((((((((...(((((((.(((((((((..........)))))))))......))))))).......))))))))..))))))))...........-------- ( -30.80)
>DroPer_CAF1 14102 98 + 1
CG-----ACUG-GGGCGAUCAAUUUAAAUUAAGCUGAAGAUUUUGCUUUAAUUAAAAAUCUUCAAAUACGCUUAAUGACAAUUAAUUGGUCAACAUCAG--C------AUCA--------
.(-----.(((-((..((((((((...(((((((((((((((((..........)))))))))).....))))))).......))))))))..).))))--)------....-------- ( -25.50)
>consensus
CG_____ACU___GGCGAUCAAUUUAAAUUAAGCCGAAGAUUUUGCUUUAAUUAAAAAUCUUCAAAUACGCUUAAUGACAAUUAAUUGGUCAACAUCAG__GC_CUCGAUCG________
................((((((((...(((((((.(((((((((..........)))))))))......))))))).......))))))))............................. (-18.07 = -18.40 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:51 2006