Locus 2479

Sequence ID 2L_DroMel_CAF1
Location 6,811,115 – 6,811,219
Length 104
Max. P 0.687728
window3970

overview

Window 0

Location 6,811,115 – 6,811,219
Length 104
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.63
Mean single sequence MFE -26.25
Consensus MFE -19.39
Energy contribution -19.20
Covariance contribution -0.19
Combinations/Pair 1.07
Mean z-score -1.78
Structure conservation index 0.74
SVM decision value 0.32
SVM RNA-class probability 0.687728
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6811115 104 + 22407834
GA--UGCUG-----------GUGCUUCGCC---ACUCGCGUGACACGUCAGAUCAAUUUUUCGAAAUAUAUUUUCUUCGAAAUUUAUUUGCCUGUCAUUAGAGUUUUUGCGGAACGUGCU
..--....(-----------(..((((((.---((((..((((((.(.(((((.((((((..((((.....))))...)))))).)))))).))))))..))))....)))))..)..)) ( -26.60)
>DroPse_CAF1 17861 113 + 1
GA--UUCUACUACUUCUGCAGCACU-CGAC---ACUCGCGUGACACGUCAGAUCAAUUUUUCGAAAUAUAUUUUCUU-GAAAUUUAUUUGCCUGUCAUUAGAGUUUUUGCAGGACGUGCC
..--......(((((((((((.(((-((..---...)..((((((.(.(((((.((((((..((((.....))))..-)))))).)))))).))))))..))))..)))))))).))).. ( -29.10)
>DroGri_CAF1 14008 102 + 1
GUUGUUGUG-------------GCU-CGCU---ACUCGCGUGACACGUCAGAUCAAUUUUUCGAAAUAUAUUUUCUAUGAAAUUUAUUUGCCUGUCAUUAGAGUU-UGGCAAAACGUGCU
((((((...-------------(((-....---((((..((((((.(.(((((.((((((..((((.....))))...)))))).)))))).))))))..)))).-.)))..)))).)). ( -25.20)
>DroMoj_CAF1 19112 101 + 1
----UUCUG-------------GCU-UGCUGGAGCUCGCGUGACACGUCAGAUCAAUUUUUCGAAAUAUAUUUUCUAUGAAAUUUAUUUGCCUGUCAUUAGAGUU-UGGCAGAACGUGCU
----....(-------------..(-(((..((.(((..((((((.(.(((((.((((((..((((.....))))...)))))).)))))).))))))..)))))-..))))..)..... ( -28.10)
>DroAna_CAF1 8152 103 + 1
GA--UGCUG-----------GCUCU-CCAC---ACUCGCGUGACACGUCAGAUCAAUUUUCCAAAAUAUAUUUUCUUCGAAAUUUAUUUGCCUGUCAUUAGAGUUUUUGCGGAACGUGCU
..--.((((-----------..(((-.((.---((((..((((((.(.(((((.((((((...(((.....)))....)))))).)))))).))))))..))))...)).))).)).)). ( -19.40)
>DroPer_CAF1 11355 113 + 1
GA--UUCUACUACUUCUGCAGCACU-CGAC---ACUCGCGUGACACGUCAGAUCAAUUUUUCGAAAUAUAUUUUCUU-GAAAUUUAUUUGCCUGUCAUUAGAGUUUUUGCAGGACGUGCC
..--......(((((((((((.(((-((..---...)..((((((.(.(((((.((((((..((((.....))))..-)))))).)))))).))))))..))))..)))))))).))).. ( -29.10)
>consensus
GA__UUCUG___________GCGCU_CGAC___ACUCGCGUGACACGUCAGAUCAAUUUUUCGAAAUAUAUUUUCUU_GAAAUUUAUUUGCCUGUCAUUAGAGUUUUUGCAGAACGUGCU
.................................((((..((((((.(.(((((.((((((..((((.....))))...)))))).)))))).))))))..))))....(((.....))). (-19.39 = -19.20 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:50 2006