Locus 2478

Sequence ID 2L_DroMel_CAF1
Location 6,807,541 – 6,807,633
Length 92
Max. P 0.886352
window3969

overview

Window 9

Location 6,807,541 – 6,807,633
Length 92
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 78.28
Mean single sequence MFE -25.78
Consensus MFE -16.60
Energy contribution -17.38
Covariance contribution 0.78
Combinations/Pair 1.05
Mean z-score -1.85
Structure conservation index 0.64
SVM decision value 0.94
SVM RNA-class probability 0.886352
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6807541 92 - 22407834
GCAAUCCAUUGUCAGCCGGCUUUUUCAGCCAUC---ACAAUCAC-----AUCUC--ACUGACAUACCCUGUCAAGGGUUCGU----UAAUUGGGGUGCAGAGUGUA
.................((((.....))))...---(((.((.(-----(((((--(.((((..(((((....)))))..))----))..)))))))..)).))). ( -25.40)
>DroPse_CAF1 14372 92 - 1
CCAUUCCAUUGUCAAGCGGCUUUUUCAGCCAUUCAGGCAAUCAAGAAACGUUUGUUGUGAAUAUACUCU----------CAC----CAAAAGGGUUGCAGAGUACA
..((((((....((((((..((((...(((.....)))....))))..)))))).)).)))).((((((----------(((----(.....)).)).)))))).. ( -23.00)
>DroSec_CAF1 10320 92 - 1
GCAAUCCAUUGUCAACCGGCUUUUUCAGCCAUC---ACAAUCAC-----AUUUC--ACUGACAUACCCUGUCAAGGGUUCGU----UAAUUGGGGUGCAGAGUGUA
(((..(((.........((((.....))))...---........-----.....--..((((..(((((....)))))..))----))..)))..)))........ ( -23.80)
>DroSim_CAF1 5334 92 - 1
GCAAUCCAUUGUCAGCCGGCUUUUUCAGCCAUC---ACAAUCAC-----AUUUC--ACUGACAUACCCUGUCAAGGGUUCGU----UAAUUGGGGUGCAGAGUGUA
(((..(((.((((((..((((.....))))...---..((....-----..)).--.)))))).(((((....)))))....----....)))..)))........ ( -24.20)
>DroEre_CAF1 9066 96 - 1
GCAAUCCAUUGUCAACCGGCUUUUUCAGCCAUC---GCAAUCAC-----AUUGC--ACUGGCAUACCCUGUCAAGGGUUAGUUGGUUAAUUGGGAUGCAGGGAACA
(((.(((...((.((((((((......((((..---(((((...-----)))))--..))))..(((((....))))).)))))))).))..)))))).(....). ( -33.40)
>DroYak_CAF1 5372 92 - 1
GCAAUCCAUUGUCACUCGGCUUUUUCAGCCAUC---ACAAUCAC-----AUUGC--ACUGGCAUACCCUGUCAAGGGUUACU----CCAUUGGGAUGCAGAGAAUA
..............(((((((.....))))...---.......(-----(((.(--(.(((...(((((....)))))....----))).)).))))..))).... ( -24.90)
>consensus
GCAAUCCAUUGUCAACCGGCUUUUUCAGCCAUC___ACAAUCAC_____AUUUC__ACUGACAUACCCUGUCAAGGGUUCGU____UAAUUGGGGUGCAGAGUAUA
(((..(((((((.....((((.....))))......))))).......................(((((....))))).............))..)))........ (-16.60 = -17.38 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:49 2006