Locus 2477

Sequence ID 2L_DroMel_CAF1
Location 6,800,197 – 6,800,307
Length 110
Max. P 0.581940
window3968

overview

Window 8

Location 6,800,197 – 6,800,307
Length 110
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 89.71
Mean single sequence MFE -41.17
Consensus MFE -35.93
Energy contribution -36.60
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.71
Structure conservation index 0.87
SVM decision value 0.10
SVM RNA-class probability 0.581940
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6800197 110 + 22407834
GGUGGCU----------AAACCUAGCAACAGCAUUUUGGCGGAGUGUUGUAGCAGUGGGCUUUGCACGGAGCACACCACACGCAAGGCGCGUUAUCCUUGUUAACAAGGUAACGCCUGGG
((((...----------...((..((.(((((((((.....))))))))).))...))(((((....))))).))))...(....)..((((((.(((((....)))))))))))..... ( -40.50)
>DroSim_CAF1 69004 110 + 1
GGAGGCU----------AAACCUAACAACAGCAUUUUGGCGGAGUGUUGUAGCAGUGGGCUUUGCACGGAGCACACCACACGCAAGGCGCGUUAUCCUUGUUCACAAGGUAACGCCUGGG
.......----------...((((...(((((((((.....))))))))).((.(((((((((....)))))...)))).(....)))((((((.(((((....))))))))))).)))) ( -38.00)
>DroYak_CAF1 70242 120 + 1
GGUAGCUCCCAAAUAGAGAAACUAGCAACAGCAUUUUGGCGGAGUGUUGUAGCAGUGGGCUUUGCACGGAGCACACCACACACAGGGCGCGUUAUCCUUGUUCACAAGGUAACGCCUGGG
(((.(((((....(((((..(((.((.(((((((((.....))))))))).)))))...)))))...)))))..))).....(((...((((((.(((((....)))))))))))))).. ( -45.00)
>consensus
GGUGGCU__________AAACCUAGCAACAGCAUUUUGGCGGAGUGUUGUAGCAGUGGGCUUUGCACGGAGCACACCACACGCAAGGCGCGUUAUCCUUGUUCACAAGGUAACGCCUGGG
....................(((((..(((((((((.....))))))))).((.(((((((((....)))))...)))).(....)))((((((.(((((....)))))))))))))))) (-35.93 = -36.60 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:48 2006