| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,799,725 – 6,799,844 |
| Length | 119 |
| Max. P | 0.843239 |
| Location | 6,799,725 – 6,799,844 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.74 |
| Mean single sequence MFE | -35.67 |
| Consensus MFE | -30.13 |
| Energy contribution | -31.13 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.843239 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6799725 119 - 22407834 AA-GAAAUAAAAAAAAAGGAUACAACUCUUACCCCAGAUGGGACUCGAACCCACAAUCCCCGGCUUAGGAGGCCGAUGCCUUAUCCAUUAGGCCACUGGGGCAUGUGGUUUAUUCUAUCA ..-.............((((((.(((((...((((((.((((.......))))........((((((((((((....))))).....))))))).))))))...).)))))))))).... ( -35.40) >DroSim_CAF1 68548 117 - 1 AA-AAAAUAAAAAUAAAGGAUACG--UCUUACCCCAGAUGGGACUCGAACCCACAAUCCCCGGCUUAGGAGGCCGAUGCCUUAUCCAUUAGGCCACUGGGGCAUGUUGCCCAUGCCGUCA ..-...............(((...--.......((((.((((.......))))........((((((((((((....))))).....))))))).))))((((((.....))))))))). ( -34.40) >DroYak_CAF1 69818 117 - 1 AGUUAAAUAAA--AAAAGAUUGCAACU-UUACCCCAGAUGGGACUCGAACCCACAAUCCCCGGCUUAGGAGGCCGAUGCCUUAUCCAUUAGGCCACUGGGGCAUGUUGCGCAAGCCGUCA ...........--........(((((.-...((((((.((((.......))))........((((((((((((....))))).....))))))).))))))...)))))........... ( -37.20) >consensus AA_AAAAUAAAAAAAAAGGAUACAACUCUUACCCCAGAUGGGACUCGAACCCACAAUCCCCGGCUUAGGAGGCCGAUGCCUUAUCCAUUAGGCCACUGGGGCAUGUUGCCCAUGCCGUCA .....................(((((.....((((((.((((.......))))........((((((((((((....))))).....))))))).))))))...)))))........... (-30.13 = -31.13 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:47 2006