Locus 2475

Sequence ID 2L_DroMel_CAF1
Location 6,797,756 – 6,797,849
Length 93
Max. P 0.659519
window3966

overview

Window 6

Location 6,797,756 – 6,797,849
Length 93
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 67.68
Mean single sequence MFE -26.53
Consensus MFE -14.16
Energy contribution -13.32
Covariance contribution -0.84
Combinations/Pair 1.55
Mean z-score -1.56
Structure conservation index 0.53
SVM decision value 0.26
SVM RNA-class probability 0.659519
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6797756 93 - 22407834
ACUGUGUUUCUGCUGACCUUAAUGCUCUUGUUGAUUCCAAUGGCCCUCUUCAGAGGUCAUAGGGG-----------CAAGGG------UUCAUUCUUUGGUUAA-UCGUAU---------
.............(((((.....((((((((....(((.((((((.((....)))))))).))))-----------))))))------).........))))).-......--------- ( -24.14)
>DroSim_CAF1 66509 93 - 1
ACUGUGUUCCUGCUGACCUUAAUGCUCUUGUUGAUUCCAAUGGCCCUCUUCAGAGGUCAUAAGGA-----------CAAGGA------UUCCGUCUUUGGUUAA-UCGUAU---------
.......((((..(((((((...(((.(((.......))).)))........)))))))..))))-----------((((((------(...))))))).....-......--------- ( -20.20)
>DroEre_CAF1 66807 94 - 1
ACUGUGCUCCUGCUGACUUUAAUGCUAUUGUUAAUUCCAAUGGCCCUUUUCAGGGGUCAUAGGAG-----------CAGCGGUCCAGGUUCAUUUUUUGGUUAA-----A----------
((((((((((((.(((((.....(((((((.......)))))))(((....))))))))))))))-----------)).))))(((((.......)))))....-----.---------- ( -32.30)
>DroYak_CAF1 67916 98 - 1
ACUGUGUUCCUGCUGACUUUAAUGCUAUUGUUAAUUCCAAUGGCCCUUUUCAGGGGUCAUAGGGG-----------CAAAGGUCCCAAUUCAUUUUUUGGUUAA-UGGUA----------
.((.((((((((.(((((.....(((((((.......)))))))(((....))))))))))))))-----------)).))...((((........))))....-.....---------- ( -27.70)
>DroAna_CAF1 64438 114 - 1
AUCGUGAUAUUGGUGAUAUUUAUGCUAGUGCUAAUUCCGAUGGCGUGCUUUAGGGGUCACAAAAUGAAUAAGUGGAGAAAGA------CUCUCACCUAGGGUAAGGCCUAUGAACUACUA
.(((((..(((((....(((...((....)).))).)))))(((.(((((((((...(((...........)))((((....------.)))).)))))))))..))))))))....... ( -28.30)
>consensus
ACUGUGUUCCUGCUGACCUUAAUGCUAUUGUUAAUUCCAAUGGCCCUCUUCAGGGGUCAUAGGGG___________CAAAGG______UUCAUUCUUUGGUUAA_UCGUAU_________
......((((((.(((((((...(((((((.......)))))))........)))))))))))))....................................................... (-14.16 = -13.32 +  -0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:46 2006