Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,797,575 – 6,797,688 |
Length | 113 |
Max. P | 0.639485 |
Location | 6,797,575 – 6,797,688 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 68.83 |
Mean single sequence MFE | -33.60 |
Consensus MFE | -19.42 |
Energy contribution | -20.18 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.18 |
Mean z-score | -1.42 |
Structure conservation index | 0.58 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.639485 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6797575 113 + 22407834 GCCACCUGGCUGAAUAGCCGUGGUACCACCAAAGACAGUAGAAUGACUGUGAGUCUCCGCUAU------GUG-UUGCUCGCUUACGCCGCUAGGUGUCGCUUAGUUAAAAUUAUAAUAUU ((((((((((.(...(((.(((....))).....(((((......)))))((((...(((...------)))-..)))))))....).))))))))..)).................... ( -28.60) >DroSim_CAF1 66348 112 + 1 GCCACCUGGCUGAACAGACGUGGUACCACCAAAGACACCAGAAUGG-UGUUAGUCUCCGCUAU------GUG-UUCUUCGCUUUCGCCGCUAGGUGUCGCUUAGCCAAAAUUAUAAUUUU ((((((((((.....(((((((....)))....((((((.....))-)))).))))..((...------(((-.....)))....)).))))))))..)).................... ( -31.60) >DroEre_CAF1 66685 100 + 1 GCCACCUGGCCG-GCAGCCGUGGUACCACC-----CA---GUUGGG-UGUGAGUCUCCGCUUUUGA----CGUUAGCUCAAUGUCGCCGCUAGGUGUCGCAGAAG------UAUUAUUUA ((((((((((.(-((....((((.((((((-----(.---...)))-))...))..))))....((----((((.....)))))))))))))))))..)).....------......... ( -38.60) >DroYak_CAF1 67783 109 + 1 GCCACCUGGCGU-GCAACCGUGCUAUCACA-----CU---GUUGGG-UGUGGGUCUCCGCUCUUAUUUUGUG-UUGCUCGAUUUUGCCGCUAGGUACCGCAUAACCAAAUUUAUUACAUA ((.((((((((.-((((.((.((...((((-----..---..((((-.((((....)))).))))...))))-..)).))...))))))))))))...)).................... ( -35.60) >consensus GCCACCUGGCUG_ACAGCCGUGGUACCACC_____CA___GAAGGG_UGUGAGUCUCCGCUAU______GUG_UUGCUCGAUUUCGCCGCUAGGUGUCGCAUAACCAAAAUUAUAAUAUA ((((((((((.........(((....)))...................((((((...(((.........)))...)))))).......))))))))..)).................... (-19.42 = -20.18 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:45 2006