Locus 2473

Sequence ID 2L_DroMel_CAF1
Location 6,797,031 – 6,797,126
Length 95
Max. P 0.575341
window3964

overview

Window 4

Location 6,797,031 – 6,797,126
Length 95
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 84.57
Mean single sequence MFE -34.58
Consensus MFE -23.68
Energy contribution -24.68
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.73
Structure conservation index 0.68
SVM decision value 0.08
SVM RNA-class probability 0.575341
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6797031 95 + 22407834
-------------------------CGUCGUGGAAGACGCGAGUCGCGGCGCGUGACACAAUUUUCAUUUAAUUGAAGCCUAAGAUGGCGGUGACUAUCAUGAGCUGGCUGCCUGACAAA
-------------------------.((((.((..(((....))).((((.((((((((....((((......))))(((......))).)))....))))).))))....))))))... ( -31.80)
>DroSim_CAF1 65791 95 + 1
-------------------------CGUCGUGGAAGACGCGAGUCGCGGCGCGUGACACAAUUUUCAUUUAAUUGAAGCCUAAGAUGGCGGUGACUAUCAUGAGCUGGCUGCCUGACAAA
-------------------------.((((.((..(((....))).((((.((((((((....((((......))))(((......))).)))....))))).))))....))))))... ( -31.80)
>DroEre_CAF1 66193 95 + 1
-------------------------CGUCGUGGAAGACGCGAGUCGCGGCGCGUGACACAAUUUUCAUUUAAUUGAAGCCUAAGAUGGCGGUGACUAUCAUGAGCUGGCUGCCUGACAAA
-------------------------.((((.((..(((....))).((((.((((((((....((((......))))(((......))).)))....))))).))))....))))))... ( -31.80)
>DroYak_CAF1 67245 95 + 1
-------------------------CGUCGUGGAAGACGCGAGUCGCGGCGCGUGACACAAUUUUCAUUUAAUUGAAGCCUAAGAUGGCGGUGACUAUCAUGUGCUGCCUGCCUGACAAA
-------------------------.((((.((..(((....)))((((((((((((((....((((......))))(((......))).)))....)))))))))))...))))))... ( -38.60)
>DroAna_CAF1 63932 118 + 1
GGUACACUCAGAACGGCUCGAGGCGGCUCGAGGCAG-CCCGAGUCGCGGCGCGUGACACAAUUUCCAUUUAAUUGAAGCCUA-GAUUGCGGGUACUAUCAUGUAGUGGCUGCCUGACAAA
.......((((...((((((.(((.((.....)).)-))))))))(((((((((((..(((((.......)))))..((((.-......))))....))))))....))))))))).... ( -38.90)
>consensus
_________________________CGUCGUGGAAGACGCGAGUCGCGGCGCGUGACACAAUUUUCAUUUAAUUGAAGCCUAAGAUGGCGGUGACUAUCAUGAGCUGGCUGCCUGACAAA
..........................((((.((..(((....))).((((.(((((..(((((.......)))))..(((......)))........))))).))))....))))))... (-23.68 = -24.68 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:44 2006