Locus 2471

Sequence ID 2L_DroMel_CAF1
Location 6,788,359 – 6,788,471
Length 112
Max. P 0.668614
window3962

overview

Window 2

Location 6,788,359 – 6,788,471
Length 112
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 76.57
Mean single sequence MFE -31.15
Consensus MFE -15.69
Energy contribution -17.17
Covariance contribution 1.48
Combinations/Pair 1.32
Mean z-score -1.87
Structure conservation index 0.50
SVM decision value 0.29
SVM RNA-class probability 0.668614
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6788359 112 + 22407834
UUCUUAGACUGUUGCUGCUGAUUGUGGGCAUGGAGAUGCACGGAUAAAUGGCCACGGCAUUAUGUUAUUGUAUCUCGGUGCUCCAUCGUUGUAAUCAUCACAAGUUGAUUAA
......((..(((((.((.(((.(.((((((.((((((((..((((....((....))....))))..)))))))).)))))))))))).)))))..))............. ( -34.40)
>DroSec_CAF1 55215 91 + 1
UUCUUAGACUGUUGCUGCUGAUUGUGGGCAUGGAG---------------------GCAUUAUGUUAUUGUAUCUCGGUGCUCCAUCGUUGUAAUCAUCACAAGUUUAUUAA
....(((((((((((.((.(((.(.((((((.(((---------------------..((.........))..))).)))))))))))).))))).......)))))).... ( -21.71)
>DroSim_CAF1 57032 112 + 1
UUCUUGGACUGUUGCUGCUGAUUGUGGGCAUGGAGAUGCACGGAUAAAUGGCCACGGCAUUAUAUUAUUGUAUCUCGGUGCUCCAUCGUUGUAAUCAUCACAAGUUGAUUAA
..((((((..(((((.((.(((.(.((((((.((((((((..((((....((....))....))))..)))))))).)))))))))))).)))))..)).))))........ ( -37.80)
>DroEre_CAF1 57865 112 + 1
UUCUUGGACUGUUGCUGCUGAUUGUGGGCAUGGAGAUGCAUGGAUAAAUGGCCACGGCAUUAUGUUCUUGUAUCUCGGUGCUCCAGCGUUGGAAUCAUCACAAGUUGAUUAA
..((((((..(((.((((((.....((((((.((((((((.(((((....((....))....))))).)))))))).)))))))))))..).)))..)).))))........ ( -38.50)
>DroYak_CAF1 58265 112 + 1
UUCUUGGACGGUUGCUGCUGAUUGUGGACAUGGAGAUGCAUGGAUAAAUGGACACGGCAUUAUGUUCUUGUAUCUCGGUGCUCCACCGCUGUAAUAAUCACAAGUUGAUUAA
..((((((..(((((.((.....((((((((.((((((((.(((((((((.......)))).))))).)))))))).))).))))).)).)))))..)).))))........ ( -38.30)
>DroMoj_CAF1 75646 104 + 1
CUCCCACAAUCUGAUUGCCUUUUGUGGAUGUACG--UAUGUGUGUAGAU--GCGCUGCAGUC----UUUCAAUCUUUGCGCUUCAUUGUUGUAAUCAUCAUAAAUUUAUUAA
...........(((((((.....(((.((.((((--......)))).))--.))).((((..----.........))))...........)))))))............... ( -16.20)
>consensus
UUCUUAGACUGUUGCUGCUGAUUGUGGGCAUGGAGAUGCAUGGAUAAAUGGCCACGGCAUUAUGUUAUUGUAUCUCGGUGCUCCAUCGUUGUAAUCAUCACAAGUUGAUUAA
......((..(((((.((....((.((((((.((((((((............................)))))))).))))))))..)).)))))..))............. (-15.69 = -17.17 +   1.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:42 2006